Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Gm18755-201ENSMUST00000218030 1099 ntBASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Pcdh1F7BJK1 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Pcdh1F7BJK1 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Gm43231-201ENSMUST00000202960 2258 ntBASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Pcdh1F7BJK1 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Gm10657-201ENSMUST00000193528 1031 ntBASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Gm5812-201ENSMUST00000061073 957 ntBASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Pcdh1F7BJK1 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Pcdh1F7BJK1 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Gm15820-201ENSMUST00000201566 728 ntBASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Gm9870-201ENSMUST00000063874 645 ntBASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Pcdh1F7BJK1 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Gm5522-201ENSMUST00000189483 1242 ntBASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
Pcdh1F7BJK1 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Pcdh1F7BJK1 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Pcdh1F7BJK1 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC17.5■□□□□ 0.39
Pcdh1F7BJK1 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.5■□□□□ 0.39
Pcdh1F7BJK1 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Pcdh1F7BJK1 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Pcdh1F7BJK1 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Pcdh1F7BJK1 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Pcdh1F7BJK1 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Pcdh1F7BJK1 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Pcdh1F7BJK1 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Pcdh1F7BJK1 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 61.3 ms