Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Gm13534-201ENSMUST00000121169 513 ntBASIC16.16■□□□□ 0.18
Chd6A3KFM7 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Chd6A3KFM7 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Chd6A3KFM7 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
Chd6A3KFM7 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd6A3KFM7 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd6A3KFM7 Gm15378-201ENSMUST00000121894 207 ntBASIC16.14■□□□□ 0.17
Chd6A3KFM7 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.14■□□□□ 0.17
Chd6A3KFM7 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Chd6A3KFM7 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd6A3KFM7 Gm33142-201ENSMUST00000193913 867 ntBASIC16.14■□□□□ 0.17
Chd6A3KFM7 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Chd6A3KFM7 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.13■□□□□ 0.17
Chd6A3KFM7 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Chd6A3KFM7 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Chd6A3KFM7 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC16.12■□□□□ 0.17
Chd6A3KFM7 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.12■□□□□ 0.17
Chd6A3KFM7 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd6A3KFM7 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Chd6A3KFM7 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd6A3KFM7 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd6A3KFM7 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd6A3KFM7 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd6A3KFM7 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd6A3KFM7 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd6A3KFM7 Gm10698-201ENSMUST00000182663 604 ntBASIC16.1■□□□□ 0.17
Chd6A3KFM7 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC16.1■□□□□ 0.17
Chd6A3KFM7 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd6A3KFM7 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd6A3KFM7 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC16.09■□□□□ 0.17
Chd6A3KFM7 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd6A3KFM7 Gm5417-201ENSMUST00000079706 384 ntBASIC16.09■□□□□ 0.17
Chd6A3KFM7 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd6A3KFM7 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Chd6A3KFM7 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC16.09■□□□□ 0.17
Chd6A3KFM7 Rab3c-203ENSMUST00000224180 967 ntBASIC16.09■□□□□ 0.17
Chd6A3KFM7 CT010444.2-201ENSMUST00000217877 1629 ntBASIC16.08■□□□□ 0.17
Chd6A3KFM7 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd6A3KFM7 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms