Protein–RNA interactions for Protein: A2APX8

Scn1a, Sodium channel protein type 1 subunit alpha, mousemouse

Predictions only

Length 2,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1aA2APX8 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1aA2APX8 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1aA2APX8 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC20.68■□□□□ 0.9
Scn1aA2APX8 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC20.68■□□□□ 0.9
Scn1aA2APX8 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn1aA2APX8 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn1aA2APX8 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Scn1aA2APX8 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.66■□□□□ 0.9
Scn1aA2APX8 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1aA2APX8 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1aA2APX8 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1aA2APX8 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1aA2APX8 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn1aA2APX8 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn1aA2APX8 Gm9988-201ENSMUST00000069786 435 ntBASIC20.65■□□□□ 0.9
Scn1aA2APX8 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Gm42642-201ENSMUST00000200683 355 ntBASIC20.64■□□□□ 0.89
Scn1aA2APX8 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn1aA2APX8 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scn1aA2APX8 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Scn1aA2APX8 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Scn1aA2APX8 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Scn1aA2APX8 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1aA2APX8 Gm13234-201ENSMUST00000120010 747 ntBASIC20.6■□□□□ 0.89
Scn1aA2APX8 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.6■□□□□ 0.89
Scn1aA2APX8 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Scn1aA2APX8 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1aA2APX8 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1aA2APX8 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1aA2APX8 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Scn1aA2APX8 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Scn1aA2APX8 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn1aA2APX8 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Scn1aA2APX8 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Scn1aA2APX8 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn1aA2APX8 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Scn1aA2APX8 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Scn1aA2APX8 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Scn1aA2APX8 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Scn1aA2APX8 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Scn1aA2APX8 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.58■□□□□ 0.89
Scn1aA2APX8 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.58■□□□□ 0.88
Scn1aA2APX8 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Scn1aA2APX8 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.58■□□□□ 0.88
Scn1aA2APX8 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.58■□□□□ 0.88
Scn1aA2APX8 AV356131-201ENSMUST00000206201 750 ntBASIC20.58■□□□□ 0.88
Scn1aA2APX8 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Scn1aA2APX8 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn1aA2APX8 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn1aA2APX8 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms