Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm37962-201ENSMUST00000195535 2034 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Itih3-205ENSMUST00000227995 2100 ntAPPRIS ALT2 BASIC11.6□□□□□ -0.55
Traf1P39428 Enthd1-201ENSMUST00000096347 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Gm43737-201ENSMUST00000199915 2740 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Deup1-203ENSMUST00000115593 3019 ntTSL 5 BASIC11.6□□□□□ -0.55
Traf1P39428 Zfp780b-201ENSMUST00000081618 3004 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Traf1P39428 Pdha2-201ENSMUST00000057860 2352 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Traf1P39428 Gm37909-201ENSMUST00000193157 2159 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Pantr1-208ENSMUST00000181660 2085 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Blnk-201ENSMUST00000054769 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Tnfrsf9-204ENSMUST00000105672 1999 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 N4bp2-201ENSMUST00000087264 5308 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Traf1P39428 Commd1-204ENSMUST00000159081 4508 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Gm14326-203ENSMUST00000108932 888 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC11.6□□□□□ -0.55
Traf1P39428 Gm12168-201ENSMUST00000119051 368 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Rpl7a-ps12-201ENSMUST00000120384 794 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Gm16480-201ENSMUST00000120439 832 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Smt3h2-ps2-201ENSMUST00000122370 288 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Gm5259-201ENSMUST00000191231 800 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Gm6342-201ENSMUST00000204344 766 ntBASIC11.6□□□□□ -0.55
Traf1P39428 A930033M14Rik-201ENSMUST00000217206 400 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Lpin1-201ENSMUST00000067124 5581 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Adam1b-201ENSMUST00000079368 3338 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Traf1P39428 Sfxn2-201ENSMUST00000026011 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Ppcdc-201ENSMUST00000085709 2744 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Slc6a12-201ENSMUST00000032200 2644 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Pear1-201ENSMUST00000029714 4260 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Traf1P39428 Cxcr2-201ENSMUST00000027372 2220 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Traf1P39428 Extl1-201ENSMUST00000030643 4126 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Gm10031-201ENSMUST00000190422 2653 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Traf1P39428 Abcg1-201ENSMUST00000024829 3610 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Slc7a3-202ENSMUST00000101362 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Gm44547-201ENSMUST00000207793 1446 ntBASIC11.6□□□□□ -0.55
Traf1P39428 Vwf-203ENSMUST00000112254 8834 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Zfp775-201ENSMUST00000061720 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Ints6l-201ENSMUST00000039374 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Ap5z1-201ENSMUST00000038699 3689 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 A630012P03Rik-202ENSMUST00000114854 1974 ntTSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Ints3-201ENSMUST00000029542 4337 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Atxn1-203ENSMUST00000180110 3901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 AC153370.2-201ENSMUST00000217920 3093 ntTSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Slitrk1-201ENSMUST00000100322 5359 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Traf1P39428 2810471M01Rik-201ENSMUST00000146554 1597 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 4932430I15Rik-201ENSMUST00000180431 3306 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Zfp568-204ENSMUST00000177931 2013 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Rgs6-201ENSMUST00000101234 1368 ntTSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Entpd8-202ENSMUST00000114376 1942 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Actl9-201ENSMUST00000174088 1373 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Traf1P39428 Pcdhb20-201ENSMUST00000052179 3559 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Traf1P39428 Dopey2-201ENSMUST00000045004 7319 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Arhgap45-202ENSMUST00000099501 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Rpain-202ENSMUST00000108529 282 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Hnf1aos1-202ENSMUST00000129609 516 ntTSL 2 BASIC11.59□□□□□ -0.55
Traf1P39428 2410141K09Rik-204ENSMUST00000173583 515 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Gm9117-201ENSMUST00000177735 1098 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
Traf1P39428 Gm3898-201ENSMUST00000180221 613 ntTSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Mir6366-201ENSMUST00000184472 82 ntBASIC11.59□□□□□ -0.55
Traf1P39428 1700012J15Rik-201ENSMUST00000203458 471 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Gm44744-201ENSMUST00000208234 852 ntTSL 3 BASIC11.59□□□□□ -0.55
Traf1P39428 Gm29328-212ENSMUST00000209182 1168 ntTSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 CAAA01125382.3-201ENSMUST00000215277 643 ntBASIC11.59□□□□□ -0.55
Traf1P39428 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC11.59□□□□□ -0.55
Traf1P39428 Gm40689-201ENSMUST00000218006 362 ntTSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Tnfrsf14-205ENSMUST00000219534 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Arhgef33-207ENSMUST00000224966 490 ntBASIC11.59□□□□□ -0.55
Traf1P39428 Epb41-204ENSMUST00000105970 5059 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Tada2a-201ENSMUST00000018795 2151 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Gm26625-201ENSMUST00000181519 2538 ntTSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Ncapd3-205ENSMUST00000216677 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Casq2-205ENSMUST00000165540 2434 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 St5-204ENSMUST00000168005 3004 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 5830462I19Rik-201ENSMUST00000168137 3383 ntBASIC11.59□□□□□ -0.55
Traf1P39428 4833420G17Rik-201ENSMUST00000026519 2565 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Olfr287-204ENSMUST00000170618 1776 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
Traf1P39428 Raf1-202ENSMUST00000112949 2946 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Gm26670-201ENSMUST00000180429 3287 ntBASIC11.59□□□□□ -0.55
Traf1P39428 Zfp804b-202ENSMUST00000200317 4430 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Traf1P39428 Cherp-207ENSMUST00000212991 3646 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Cd74-203ENSMUST00000167610 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Fmo3-201ENSMUST00000028010 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Traf1P39428 Snd1-201ENSMUST00000001460 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Rab36-207ENSMUST00000147802 3291 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Mettl8-204ENSMUST00000112186 2347 ntAPPRIS P2 TSL 2 BASIC11.58□□□□□ -0.56
Traf1P39428 Robo4-202ENSMUST00000115046 3878 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
Traf1P39428 Smok3a-202ENSMUST00000171498 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Tcl1-201ENSMUST00000041316 1398 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Timm9-208ENSMUST00000221797 2564 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Gabra5-203ENSMUST00000206734 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Gm26780-201ENSMUST00000180748 2495 ntTSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Gm40557-201ENSMUST00000220782 2736 ntTSL 5 BASIC11.58□□□□□ -0.56
Traf1P39428 Arap1-201ENSMUST00000084895 4404 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 Tomm5-203ENSMUST00000107809 738 ntTSL 3 BASIC11.58□□□□□ -0.56
Traf1P39428 Wfdc2-203ENSMUST00000109345 558 ntAPPRIS ALT2 TSL 3 BASIC11.58□□□□□ -0.56
Traf1P39428 Gm12645-201ENSMUST00000117297 275 ntBASIC11.58□□□□□ -0.56
Traf1P39428 Gm13215-201ENSMUST00000117559 472 ntBASIC11.58□□□□□ -0.56
Traf1P39428 Gm15476-201ENSMUST00000118247 1191 ntBASIC11.58□□□□□ -0.56
Traf1P39428 Gm13191-201ENSMUST00000136489 416 ntTSL 3 BASIC11.58□□□□□ -0.56
Traf1P39428 Gm26679-201ENSMUST00000181685 659 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Traf1P39428 1700065O20Rik-201ENSMUST00000186872 710 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms