Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cux1P53564 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cux1P53564 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cux1P53564 Stat1-203ENSMUST00000186057 3998 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cux1P53564 Ehd2-201ENSMUST00000098799 5119 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cux1P53564 Gm44095-201ENSMUST00000204631 1931 ntBASIC15.15■□□□□ 0.02
Cux1P53564 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Vwce-201ENSMUST00000055115 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Gtf2i-224ENSMUST00000174772 4078 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Cux1P53564 Chrng-201ENSMUST00000027470 2780 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
Cux1P53564 Vrtn-203ENSMUST00000167227 3440 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
Cux1P53564 Mroh8-202ENSMUST00000143663 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Gm12353-201ENSMUST00000108250 554 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Cux1P53564 Gm14663-201ENSMUST00000118474 1153 ntBASIC15.14■□□□□ 0.01
Cux1P53564 Gm12508-201ENSMUST00000121282 480 ntBASIC15.14■□□□□ 0.01
Cux1P53564 Gm13799-201ENSMUST00000138883 838 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Gm24912-201ENSMUST00000157291 117 ntBASIC15.14■□□□□ 0.01
Cux1P53564 Myl6-201ENSMUST00000164181 665 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 B020031M17Rik-202ENSMUST00000180768 925 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Gm29434-201ENSMUST00000187426 260 ntBASIC15.14■□□□□ 0.01
Cux1P53564 Gm37350-201ENSMUST00000192782 313 ntTSL 5 BASIC15.14■□□□□ 0.01
Cux1P53564 Gm42789-201ENSMUST00000202276 567 ntBASIC15.14■□□□□ 0.01
Cux1P53564 AC167017.1-201ENSMUST00000214975 412 ntBASIC15.14■□□□□ 0.01
Cux1P53564 Gm36550-201ENSMUST00000221947 416 ntTSL 3 BASIC15.14■□□□□ 0.01
Cux1P53564 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cux1P53564 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 4933427I22Rik-202ENSMUST00000153921 1378 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Pfkfb2-210ENSMUST00000189167 1558 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 5330411J11Rik-201ENSMUST00000137162 1635 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Cux1P53564 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC15.14■□□□□ 0.01
Cux1P53564 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC15.14■□□□□ 0.01
Cux1P53564 Tmcc2-203ENSMUST00000132435 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Slc35f6-201ENSMUST00000062962 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Pus7l-201ENSMUST00000049151 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cux1P53564 Tomm40l-202ENSMUST00000111326 2753 ntTSL 5 BASIC15.14■□□□□ 0.01
Cux1P53564 4931406C07Rik-201ENSMUST00000034414 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cux1P53564 A530064D06Rik-201ENSMUST00000027764 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Cphx3-201ENSMUST00000163305 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Gm32284-201ENSMUST00000213704 1484 ntTSL 5 BASIC15.13■□□□□ 0.01
Cux1P53564 Col19a1-202ENSMUST00000115244 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 AC125487.1-201ENSMUST00000217888 1300 ntBASIC15.13■□□□□ 0.01
Cux1P53564 Ighv1-7-201ENSMUST00000103496 388 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Cux1P53564 Odam-201ENSMUST00000113274 872 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Gm16014-201ENSMUST00000123363 544 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Rps10-208ENSMUST00000178774 498 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Cux1P53564 Gm18822-201ENSMUST00000182857 1025 ntBASIC15.13■□□□□ 0.01
Cux1P53564 Mrpl55-201ENSMUST00000045697 940 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Morn3-202ENSMUST00000045843 904 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Mir25-201ENSMUST00000083460 84 ntBASIC15.13■□□□□ 0.01
Cux1P53564 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Nell2-202ENSMUST00000166170 3366 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cux1P53564 Recql-202ENSMUST00000100832 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cux1P53564 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Zfp236-201ENSMUST00000171071 9626 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 5430434F05Rik-201ENSMUST00000206080 3553 ntBASIC15.13■□□□□ 0.01
Cux1P53564 Pip5k1a-201ENSMUST00000005768 3480 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cux1P53564 Zc3hav1-201ENSMUST00000031850 3400 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Padi3-201ENSMUST00000026377 3072 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Fignl1-207ENSMUST00000171938 2974 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Pfkfb2-201ENSMUST00000050406 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Gm16299-201ENSMUST00000162724 2766 ntTSL 3 BASIC15.13■□□□□ 0.01
Cux1P53564 Pgf-201ENSMUST00000004913 1582 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 AC140299.1-201ENSMUST00000217855 1510 ntBASIC15.13■□□□□ 0.01
Cux1P53564 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 1110019D14Rik-202ENSMUST00000181225 1499 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Elavl1-204ENSMUST00000209010 2317 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cux1P53564 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cux1P53564 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Gm15104-201ENSMUST00000132626 842 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Ppp1r2-ps9-202ENSMUST00000173852 882 ntBASIC15.12■□□□□ 0.01
Cux1P53564 Celrr-201ENSMUST00000181183 1194 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 2010009K17Rik-201ENSMUST00000186977 567 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 4930449E01Rik-202ENSMUST00000188698 532 ntTSL 3 BASIC15.12■□□□□ 0.01
Cux1P53564 Gm31363-201ENSMUST00000199362 541 ntTSL 3 BASIC15.12■□□□□ 0.01
Cux1P53564 Gm44576-201ENSMUST00000208876 411 ntBASIC15.12■□□□□ 0.01
Cux1P53564 Gm45788-201ENSMUST00000212210 584 ntTSL 3 BASIC15.12■□□□□ 0.01
Cux1P53564 Gm40723-201ENSMUST00000219407 603 ntTSL 3 BASIC15.12■□□□□ 0.01
Cux1P53564 Gm9973-204ENSMUST00000221569 683 ntTSL 5 BASIC15.12■□□□□ 0.01
Cux1P53564 AC129017.2-201ENSMUST00000226118 1284 ntBASIC15.12■□□□□ 0.01
Cux1P53564 Gstm2-202ENSMUST00000066530 854 ntTSL 3 BASIC15.12■□□□□ 0.01
Cux1P53564 Plac8l1-201ENSMUST00000081374 763 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Cbx1-203ENSMUST00000093943 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Irx6-202ENSMUST00000167261 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Gm8257-201ENSMUST00000111860 1590 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Cux1P53564 Gm18981-201ENSMUST00000185373 1599 ntBASIC15.12■□□□□ 0.01
Cux1P53564 Hnrnpc-201ENSMUST00000111610 2847 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Cux1P53564 Hnrnpc-202ENSMUST00000164655 2843 ntTSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 46.2 ms