Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm20831-201ENSMUST00000177639 1337 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Nbdy-204ENSMUST00000185492 1346 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm20737-202ENSMUST00000187245 1338 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Gm20777-202ENSMUST00000187434 1341 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Gm20873-202ENSMUST00000187857 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm20772-201ENSMUST00000188928 1343 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Gm21310-202ENSMUST00000189630 1343 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm20795-202ENSMUST00000190909 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm21440-201ENSMUST00000192749 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm20831-202ENSMUST00000194411 1344 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm21425-202ENSMUST00000195626 1345 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Ighmbp2-201ENSMUST00000025751 3720 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gramd1b-212ENSMUST00000165104 3824 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Gm20796-201ENSMUST00000180355 5838 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Olfr222-202ENSMUST00000214351 2474 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Fut10-201ENSMUST00000066173 3183 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gk2-201ENSMUST00000059657 1880 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Traf1P39428 Mre11a-201ENSMUST00000034405 3286 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Sfi1-202ENSMUST00000081318 3969 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Loxl4-201ENSMUST00000026190 3738 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Shank2-205ENSMUST00000146006 7666 ntTSL 2 BASIC11.62□□□□□ -0.55
Traf1P39428 Gm24066-201ENSMUST00000104515 131 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Gm12736-201ENSMUST00000119330 236 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Gm15650-201ENSMUST00000135451 770 ntTSL 3 BASIC11.62□□□□□ -0.55
Traf1P39428 A630023P12Rik-203ENSMUST00000141532 638 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm23432-201ENSMUST00000157181 131 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Gm26021-201ENSMUST00000158664 131 ntBASIC11.62□□□□□ -0.55
Traf1P39428 1700028K03Rik-202ENSMUST00000159902 742 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Traf1P39428 Gm3617-201ENSMUST00000173076 555 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC11.62□□□□□ -0.55
Traf1P39428 Rab38-202ENSMUST00000208478 579 ntTSL 3 BASIC11.62□□□□□ -0.55
Traf1P39428 CT025547.1-201ENSMUST00000225127 578 ntBASIC11.62□□□□□ -0.55
Traf1P39428 AC154766.1-201ENSMUST00000226550 936 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Adh6-ps1-201ENSMUST00000171054 2789 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Tomm40l-201ENSMUST00000005817 4712 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm15953-201ENSMUST00000117656 1732 ntBASIC11.62□□□□□ -0.55
Traf1P39428 AC117648.1-201ENSMUST00000219777 2510 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Oprm1-211ENSMUST00000105602 1366 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Adcy3-201ENSMUST00000020984 4348 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 B4galt4-204ENSMUST00000114711 1481 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Zc3h18-202ENSMUST00000093073 3705 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Gm14565-201ENSMUST00000140021 2494 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Tdp1-201ENSMUST00000021594 2019 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Ddx21-201ENSMUST00000045866 4722 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Arsb-201ENSMUST00000091403 4038 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Mthfr-202ENSMUST00000097788 2652 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 Nbr1-203ENSMUST00000103099 4789 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Traf1P39428 AC116596.1-201ENSMUST00000228112 1762 ntBASIC11.62□□□□□ -0.55
Traf1P39428 Gpr35-202ENSMUST00000064480 3409 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Ehmt1-202ENSMUST00000091348 4615 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Gm44933-201ENSMUST00000208637 1987 ntTSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Hhip-201ENSMUST00000079038 9074 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Slc16a5-202ENSMUST00000106532 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 5730419F03Rik-201ENSMUST00000190504 2092 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 4932442E05Rik-201ENSMUST00000191892 2717 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Gm15535-202ENSMUST00000148478 1519 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Aasdhppt-201ENSMUST00000051589 2843 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 CT025639.2-202ENSMUST00000225298 1630 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Tmem184a-202ENSMUST00000110832 4326 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Sun1-204ENSMUST00000110882 2454 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Mfsd2b-201ENSMUST00000045921 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Card14-201ENSMUST00000053245 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Ccdc116-202ENSMUST00000115709 1900 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Agbl2-201ENSMUST00000037206 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Kif1b-202ENSMUST00000055647 5992 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Gm12047-201ENSMUST00000117561 944 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Ak3l2-ps-201ENSMUST00000120282 672 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Gm11513-201ENSMUST00000138855 751 ntTSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Gm13713-201ENSMUST00000139377 703 ntTSL 3 BASIC11.61□□□□□ -0.55
Traf1P39428 Gm13629-201ENSMUST00000141149 1022 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Gm13713-202ENSMUST00000155472 285 ntTSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Gm4775-201ENSMUST00000169588 402 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Gm4866-201ENSMUST00000197408 589 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Gm40332-201ENSMUST00000199847 938 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Gm44139-201ENSMUST00000204903 373 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Hesx1-202ENSMUST00000224331 983 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Traf1P39428 AC102327.1-201ENSMUST00000226389 742 ntBASIC11.61□□□□□ -0.55
Traf1P39428 4933413C19Rik-201ENSMUST00000162380 2217 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Nfkbiz-201ENSMUST00000036273 4115 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Elavl1-204ENSMUST00000209010 2317 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Harbi1-201ENSMUST00000090608 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Sgca-201ENSMUST00000100551 1465 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Gm9220-201ENSMUST00000190721 2544 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Gm37484-201ENSMUST00000195378 2523 ntBASIC11.61□□□□□ -0.55
Traf1P39428 Tubb5-201ENSMUST00000001566 2649 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 A430105I19Rik-201ENSMUST00000059997 4703 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 4631405J19Rik-202ENSMUST00000111270 2909 ntTSL 2 BASIC11.61□□□□□ -0.55
Traf1P39428 Gm10093-201ENSMUST00000079363 1977 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Traf1P39428 Gm16499-201ENSMUST00000204648 2065 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Odf2-207ENSMUST00000113762 2353 ntTSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Gpr149-201ENSMUST00000058535 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Ttll7-205ENSMUST00000170055 6075 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 D630003M21Rik-203ENSMUST00000169335 3457 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Traf1P39428 Top1-201ENSMUST00000109468 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Traf1P39428 Nod2-203ENSMUST00000118370 4653 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Ppp1r26-205ENSMUST00000189694 5463 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Traf1P39428 Ppp1r26-201ENSMUST00000040324 5466 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms