Protein–RNA interactions for Protein: Q9Z0H3

Smarcb1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, mousemouse

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcb1Q9Z0H3 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC20.44■□□□□ 0.86
Smarcb1Q9Z0H3 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarcb1Q9Z0H3 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Smarcb1Q9Z0H3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Smarcb1Q9Z0H3 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Gm13234-201ENSMUST00000120010 747 ntBASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Smarcb1Q9Z0H3 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.42■□□□□ 0.86
Smarcb1Q9Z0H3 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarcb1Q9Z0H3 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Smarcb1Q9Z0H3 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.4■□□□□ 0.86
Smarcb1Q9Z0H3 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.4■□□□□ 0.86
Smarcb1Q9Z0H3 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Smarcb1Q9Z0H3 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Smarcb1Q9Z0H3 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Smarcb1Q9Z0H3 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Smarcb1Q9Z0H3 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Smarcb1Q9Z0H3 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Smarcb1Q9Z0H3 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.37■□□□□ 0.85
Smarcb1Q9Z0H3 Reep4-203ENSMUST00000226563 1444 ntBASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Smarcb1Q9Z0H3 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Gm37179-201ENSMUST00000194862 823 ntBASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Smarcb1Q9Z0H3 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcb1Q9Z0H3 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcb1Q9Z0H3 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.34■□□□□ 0.85
Smarcb1Q9Z0H3 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcb1Q9Z0H3 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Smarcb1Q9Z0H3 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.34■□□□□ 0.85
Smarcb1Q9Z0H3 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.34■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms