Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Scn11aQ9R053 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Scn11aQ9R053 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC23.73■■□□□ 1.39
Scn11aQ9R053 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Scn11aQ9R053 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Gm10602-201ENSMUST00000098239 609 ntBASIC23.72■■□□□ 1.39
Scn11aQ9R053 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Scn11aQ9R053 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Scn11aQ9R053 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC23.71■■□□□ 1.39
Scn11aQ9R053 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Scn11aQ9R053 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Scn11aQ9R053 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Scn11aQ9R053 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
Scn11aQ9R053 CT010467.1-202ENSMUST00000205406 714 ntBASIC23.7■■□□□ 1.39
Scn11aQ9R053 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.39
Scn11aQ9R053 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC23.7■■□□□ 1.38
Scn11aQ9R053 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
Scn11aQ9R053 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC23.7■■□□□ 1.38
Scn11aQ9R053 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
Scn11aQ9R053 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Gm15043-201ENSMUST00000118843 1543 ntBASIC23.69■■□□□ 1.38
Scn11aQ9R053 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
Scn11aQ9R053 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Scn11aQ9R053 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Gm42778-201ENSMUST00000199644 553 ntBASIC23.68■■□□□ 1.38
Scn11aQ9R053 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Scn11aQ9R053 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Scn11aQ9R053 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
Scn11aQ9R053 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Scn11aQ9R053 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Scn11aQ9R053 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC23.67■■□□□ 1.38
Scn11aQ9R053 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Scn11aQ9R053 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Scn11aQ9R053 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
Scn11aQ9R053 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
Scn11aQ9R053 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
Scn11aQ9R053 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Scn11aQ9R053 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC23.65■■□□□ 1.38
Scn11aQ9R053 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Gm43909-201ENSMUST00000203443 1876 ntBASIC23.65■■□□□ 1.38
Scn11aQ9R053 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Scn11aQ9R053 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Scn11aQ9R053 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC23.64■■□□□ 1.38
Scn11aQ9R053 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Scn11aQ9R053 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC23.64■■□□□ 1.37
Scn11aQ9R053 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Gm13146-201ENSMUST00000118508 780 ntBASIC23.63■■□□□ 1.37
Scn11aQ9R053 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC23.63■■□□□ 1.37
Scn11aQ9R053 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Scn11aQ9R053 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Scn11aQ9R053 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Scn11aQ9R053 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
Scn11aQ9R053 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Scn11aQ9R053 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
Scn11aQ9R053 Gm12441-201ENSMUST00000121806 588 ntBASIC23.62■■□□□ 1.37
Scn11aQ9R053 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Scn11aQ9R053 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC23.62■■□□□ 1.37
Scn11aQ9R053 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Scn11aQ9R053 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Scn11aQ9R053 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Scn11aQ9R053 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Scn11aQ9R053 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Scn11aQ9R053 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
Scn11aQ9R053 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
Scn11aQ9R053 Cdkn3-203ENSMUST00000227149 1952 ntBASIC23.6■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms