Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Cdc40Q9DC48 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Gm37035-201ENSMUST00000194809 2148 ntBASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC18.16■□□□□ 0.5
Cdc40Q9DC48 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Gm18284-201ENSMUST00000172604 624 ntBASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Mir6236-201ENSMUST00000184437 123 ntBASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Cdc40Q9DC48 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Gm8495-201ENSMUST00000188740 694 ntBASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Cdc40Q9DC48 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Cdc40Q9DC48 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
Cdc40Q9DC48 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Cdc40Q9DC48 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdc40Q9DC48 Gm12251-201ENSMUST00000117893 792 ntBASIC18.14■□□□□ 0.49
Cdc40Q9DC48 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdc40Q9DC48 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdc40Q9DC48 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdc40Q9DC48 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Cdc40Q9DC48 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Cdc40Q9DC48 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Cdc40Q9DC48 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Cdc40Q9DC48 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Gm43173-201ENSMUST00000202246 593 ntBASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Slc35b2-207ENSMUST00000226086 850 ntBASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Cdc40Q9DC48 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Cdc40Q9DC48 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms