Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Rpap3Q9D706 Gm42911-201ENSMUST00000199360 1630 ntBASIC21.74■■□□□ 1.07
Rpap3Q9D706 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Rpap3Q9D706 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
Rpap3Q9D706 AA386476-201ENSMUST00000098781 1665 ntBASIC21.74■■□□□ 1.07
Rpap3Q9D706 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rpap3Q9D706 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rpap3Q9D706 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Rpap3Q9D706 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Rpap3Q9D706 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rpap3Q9D706 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.73■■□□□ 1.07
Rpap3Q9D706 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Rpap3Q9D706 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rpap3Q9D706 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rpap3Q9D706 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rpap3Q9D706 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rpap3Q9D706 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rpap3Q9D706 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Rpap3Q9D706 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rpap3Q9D706 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rpap3Q9D706 Gm13234-201ENSMUST00000120010 747 ntBASIC21.71■■□□□ 1.07
Rpap3Q9D706 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rpap3Q9D706 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.71■■□□□ 1.07
Rpap3Q9D706 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC21.71■■□□□ 1.07
Rpap3Q9D706 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.71■■□□□ 1.07
Rpap3Q9D706 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.71■■□□□ 1.07
Rpap3Q9D706 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rpap3Q9D706 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rpap3Q9D706 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
Rpap3Q9D706 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC21.7■■□□□ 1.06
Rpap3Q9D706 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rpap3Q9D706 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rpap3Q9D706 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rpap3Q9D706 Reep4-203ENSMUST00000226563 1444 ntBASIC21.7■■□□□ 1.06
Rpap3Q9D706 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rpap3Q9D706 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rpap3Q9D706 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.69■■□□□ 1.06
Rpap3Q9D706 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.69■■□□□ 1.06
Rpap3Q9D706 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Rpap3Q9D706 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rpap3Q9D706 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.68■■□□□ 1.06
Rpap3Q9D706 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.68■■□□□ 1.06
Rpap3Q9D706 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Rpap3Q9D706 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rpap3Q9D706 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rpap3Q9D706 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Rpap3Q9D706 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Rpap3Q9D706 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Rpap3Q9D706 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Rpap3Q9D706 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.67■■□□□ 1.06
Rpap3Q9D706 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Rpap3Q9D706 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Gm37179-201ENSMUST00000194862 823 ntBASIC21.66■■□□□ 1.06
Rpap3Q9D706 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.66■■□□□ 1.06
Rpap3Q9D706 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Rpap3Q9D706 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Gm43909-201ENSMUST00000203443 1876 ntBASIC21.65■■□□□ 1.06
Rpap3Q9D706 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC21.65■■□□□ 1.06
Rpap3Q9D706 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Rpap3Q9D706 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Rpap3Q9D706 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Rpap3Q9D706 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Rpap3Q9D706 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Rpap3Q9D706 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Rpap3Q9D706 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Rpap3Q9D706 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.63■■□□□ 1.05
Rpap3Q9D706 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.63■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms