Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC23.76■■□□□ 1.39
Brf1Q8CFK2 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Brf1Q8CFK2 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
Brf1Q8CFK2 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Gm8493-201ENSMUST00000196881 489 ntBASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Gm6139-201ENSMUST00000079261 882 ntBASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Brf1Q8CFK2 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Brf1Q8CFK2 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC23.72■■□□□ 1.39
Brf1Q8CFK2 Wdr70-203ENSMUST00000227371 1130 ntBASIC23.72■■□□□ 1.39
Brf1Q8CFK2 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
Brf1Q8CFK2 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Brf1Q8CFK2 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
Brf1Q8CFK2 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC23.72■■□□□ 1.39
Brf1Q8CFK2 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 AA386476-201ENSMUST00000098781 1665 ntBASIC23.71■■□□□ 1.39
Brf1Q8CFK2 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Gm43173-201ENSMUST00000202246 593 ntBASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Brf1Q8CFK2 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
Brf1Q8CFK2 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Brf1Q8CFK2 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Brf1Q8CFK2 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC23.69■■□□□ 1.38
Brf1Q8CFK2 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
Brf1Q8CFK2 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Brf1Q8CFK2 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
Brf1Q8CFK2 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Brf1Q8CFK2 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Brf1Q8CFK2 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Brf1Q8CFK2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC23.67■■□□□ 1.38
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms