Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ubfd1Q78JW9 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ubfd1Q78JW9 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ubfd1Q78JW9 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Ubfd1Q78JW9 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.18■□□□□ 0.66
Ubfd1Q78JW9 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Ubfd1Q78JW9 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Gm42778-201ENSMUST00000199644 553 ntBASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Gm18671-201ENSMUST00000214826 683 ntBASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Ubfd1Q78JW9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Ubfd1Q78JW9 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Ubfd1Q78JW9 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.16■□□□□ 0.66
Ubfd1Q78JW9 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Ubfd1Q78JW9 Snhg20-203ENSMUST00000182811 2153 ntBASIC19.16■□□□□ 0.66
Ubfd1Q78JW9 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.16■□□□□ 0.66
Ubfd1Q78JW9 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Gm10849-201ENSMUST00000100397 618 ntBASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Gm42569-201ENSMUST00000200539 472 ntBASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Ubfd1Q78JW9 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Ubfd1Q78JW9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Gm26571-201ENSMUST00000181399 666 ntBASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Ubfd1Q78JW9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Gm9988-201ENSMUST00000069786 435 ntBASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
Ubfd1Q78JW9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Gm10033-202ENSMUST00000211874 928 ntBASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC19.12■□□□□ 0.65
Ubfd1Q78JW9 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Gm27405-201ENSMUST00000184201 112 ntBASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Gm7291-201ENSMUST00000199147 382 ntBASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 AA386476-201ENSMUST00000098781 1665 ntBASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.11■□□□□ 0.65
Ubfd1Q78JW9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC19.1■□□□□ 0.65
Ubfd1Q78JW9 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ubfd1Q78JW9 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ubfd1Q78JW9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
Ubfd1Q78JW9 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Ubfd1Q78JW9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ubfd1Q78JW9 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ubfd1Q78JW9 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ubfd1Q78JW9 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms