Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Scaf4Q6PFF0 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Gm5921-201ENSMUST00000075898 882 ntBASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Scaf4Q6PFF0 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Scaf4Q6PFF0 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Scaf4Q6PFF0 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Scaf4Q6PFF0 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Scaf4Q6PFF0 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scaf4Q6PFF0 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Scaf4Q6PFF0 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scaf4Q6PFF0 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Scaf4Q6PFF0 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scaf4Q6PFF0 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scaf4Q6PFF0 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Scaf4Q6PFF0 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Gm43530-201ENSMUST00000195920 274 ntBASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Cap2-205ENSMUST00000225824 1634 ntBASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Scaf4Q6PFF0 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Scaf4Q6PFF0 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Gm40881-201ENSMUST00000223397 166 ntBASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scaf4Q6PFF0 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Scaf4Q6PFF0 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scaf4Q6PFF0 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scaf4Q6PFF0 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.29■□□□□ 0.68
Scaf4Q6PFF0 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scaf4Q6PFF0 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scaf4Q6PFF0 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scaf4Q6PFF0 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms