Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.38■□□□□ 0.37
Snrnp40Q6PE01 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC17.37■□□□□ 0.37
Snrnp40Q6PE01 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
Snrnp40Q6PE01 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Snrnp40Q6PE01 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Snrnp40Q6PE01 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Snrnp40Q6PE01 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Snrnp40Q6PE01 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Snrnp40Q6PE01 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.36■□□□□ 0.37
Snrnp40Q6PE01 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Gm38205-201ENSMUST00000192243 258 ntBASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Gm6420-201ENSMUST00000193885 723 ntBASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Snrnp40Q6PE01 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Snrnp40Q6PE01 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Snrnp40Q6PE01 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Snrnp40Q6PE01 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Snrnp40Q6PE01 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.33■□□□□ 0.36
Snrnp40Q6PE01 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Gm13168-201ENSMUST00000121771 632 ntBASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Snrnp40Q6PE01 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 Gm20049-201ENSMUST00000219950 730 ntBASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Snrnp40Q6PE01 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Snrnp40Q6PE01 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Snrnp40Q6PE01 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms