Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Dio3-201ENSMUST00000097228 1449 ntBASIC16.73■□□□□ 0.27
Col7a1Q63870 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col7a1Q63870 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC16.73■□□□□ 0.27
Col7a1Q63870 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col7a1Q63870 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC16.73■□□□□ 0.27
Col7a1Q63870 Gm12896-201ENSMUST00000118430 226 ntBASIC16.73■□□□□ 0.27
Col7a1Q63870 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col7a1Q63870 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col7a1Q63870 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col7a1Q63870 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col7a1Q63870 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col7a1Q63870 Gm18101-201ENSMUST00000215769 548 ntBASIC16.72■□□□□ 0.27
Col7a1Q63870 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col7a1Q63870 Gm43799-201ENSMUST00000201845 579 ntBASIC16.72■□□□□ 0.27
Col7a1Q63870 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC16.72■□□□□ 0.27
Col7a1Q63870 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Col7a1Q63870 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC16.71■□□□□ 0.27
Col7a1Q63870 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col7a1Q63870 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col7a1Q63870 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.71■□□□□ 0.27
Col7a1Q63870 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
Col7a1Q63870 Gm25925-201ENSMUST00000158314 306 ntBASIC16.71■□□□□ 0.27
Col7a1Q63870 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC16.71■□□□□ 0.27
Col7a1Q63870 Gm10571-201ENSMUST00000097869 1638 ntBASIC16.71■□□□□ 0.27
Col7a1Q63870 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC16.71■□□□□ 0.27
Col7a1Q63870 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col7a1Q63870 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Col7a1Q63870 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Col7a1Q63870 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col7a1Q63870 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col7a1Q63870 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col7a1Q63870 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col7a1Q63870 Gm10698-201ENSMUST00000182663 604 ntBASIC16.69■□□□□ 0.26
Col7a1Q63870 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col7a1Q63870 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Col7a1Q63870 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Col7a1Q63870 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col7a1Q63870 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Col7a1Q63870 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Gm6659-201ENSMUST00000174752 547 ntBASIC16.68■□□□□ 0.26
Col7a1Q63870 CT010467.1-202ENSMUST00000205406 714 ntBASIC16.68■□□□□ 0.26
Col7a1Q63870 Rab3c-203ENSMUST00000224180 967 ntBASIC16.68■□□□□ 0.26
Col7a1Q63870 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC16.68■□□□□ 0.26
Col7a1Q63870 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Col7a1Q63870 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col7a1Q63870 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC16.67■□□□□ 0.26
Col7a1Q63870 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col7a1Q63870 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col7a1Q63870 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col7a1Q63870 Gm10167-201ENSMUST00000150411 1479 ntBASIC16.67■□□□□ 0.26
Col7a1Q63870 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Col7a1Q63870 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col7a1Q63870 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col7a1Q63870 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col7a1Q63870 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC16.66■□□□□ 0.26
Col7a1Q63870 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
Col7a1Q63870 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col7a1Q63870 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Gm6728-201ENSMUST00000178117 1065 ntBASIC16.66■□□□□ 0.26
Col7a1Q63870 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col7a1Q63870 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC16.65■□□□□ 0.26
Col7a1Q63870 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.65■□□□□ 0.26
Col7a1Q63870 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Col7a1Q63870 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col7a1Q63870 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Col7a1Q63870 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.65■□□□□ 0.26
Col7a1Q63870 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC16.65■□□□□ 0.26
Col7a1Q63870 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col7a1Q63870 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col7a1Q63870 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Col7a1Q63870 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col7a1Q63870 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col7a1Q63870 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col7a1Q63870 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col7a1Q63870 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col7a1Q63870 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 12.6 ms