Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usf1Q61069 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usf1Q61069 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Usf1Q61069 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usf1Q61069 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC17.95■□□□□ 0.46
Usf1Q61069 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Usf1Q61069 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.95■□□□□ 0.46
Usf1Q61069 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.95■□□□□ 0.46
Usf1Q61069 Gm37415-201ENSMUST00000192265 2054 ntBASIC17.95■□□□□ 0.46
Usf1Q61069 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usf1Q61069 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Usf1Q61069 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Usf1Q61069 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usf1Q61069 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usf1Q61069 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usf1Q61069 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usf1Q61069 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Usf1Q61069 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.94■□□□□ 0.46
Usf1Q61069 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Usf1Q61069 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usf1Q61069 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Usf1Q61069 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usf1Q61069 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usf1Q61069 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usf1Q61069 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Usf1Q61069 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
Usf1Q61069 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usf1Q61069 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usf1Q61069 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usf1Q61069 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usf1Q61069 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usf1Q61069 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usf1Q61069 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
Usf1Q61069 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usf1Q61069 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Usf1Q61069 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usf1Q61069 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC17.92■□□□□ 0.46
Usf1Q61069 Gm20049-201ENSMUST00000219950 730 ntBASIC17.92■□□□□ 0.46
Usf1Q61069 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usf1Q61069 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usf1Q61069 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.91■□□□□ 0.46
Usf1Q61069 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Usf1Q61069 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Mir7071-201ENSMUST00000184847 69 ntBASIC17.91■□□□□ 0.46
Usf1Q61069 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC17.91■□□□□ 0.46
Usf1Q61069 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Usf1Q61069 AC122428.2-201ENSMUST00000216321 1832 ntBASIC17.91■□□□□ 0.46
Usf1Q61069 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usf1Q61069 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usf1Q61069 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC17.9■□□□□ 0.46
Usf1Q61069 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.9■□□□□ 0.46
Usf1Q61069 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.9■□□□□ 0.46
Usf1Q61069 Gm22325-201ENSMUST00000158904 308 ntBASIC17.9■□□□□ 0.46
Usf1Q61069 Gm6420-201ENSMUST00000193885 723 ntBASIC17.9■□□□□ 0.46
Usf1Q61069 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.9■□□□□ 0.46
Usf1Q61069 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.9■□□□□ 0.46
Usf1Q61069 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usf1Q61069 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Usf1Q61069 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Usf1Q61069 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Usf1Q61069 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Usf1Q61069 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.89■□□□□ 0.45
Usf1Q61069 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.89■□□□□ 0.45
Usf1Q61069 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC17.89■□□□□ 0.45
Usf1Q61069 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Usf1Q61069 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 Gm10812-201ENSMUST00000099864 546 ntBASIC17.89■□□□□ 0.45
Usf1Q61069 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Usf1Q61069 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Usf1Q61069 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Usf1Q61069 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Usf1Q61069 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usf1Q61069 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.88■□□□□ 0.45
Usf1Q61069 Gm38205-201ENSMUST00000192243 258 ntBASIC17.88■□□□□ 0.45
Usf1Q61069 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.88■□□□□ 0.45
Usf1Q61069 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.88■□□□□ 0.45
Usf1Q61069 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usf1Q61069 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usf1Q61069 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Usf1Q61069 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Usf1Q61069 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Usf1Q61069 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 73.2 ms