Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Gm15043-201ENSMUST00000118843 1543 ntBASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Cdkn3-203ENSMUST00000227149 1952 ntBASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC16.53■□□□□ 0.24
Trav6d-4Q5R1I0 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav6d-4Q5R1I0 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav6d-4Q5R1I0 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav6d-4Q5R1I0 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Trav6d-4Q5R1I0 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Gm8495-201ENSMUST00000188740 694 ntBASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC16.51■□□□□ 0.23
Trav6d-4Q5R1I0 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Gm10571-201ENSMUST00000097869 1638 ntBASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Trav6d-4Q5R1I0 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav6d-4Q5R1I0 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Gm5874-201ENSMUST00000096101 508 ntBASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav6d-4Q5R1I0 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC16.47■□□□□ 0.23
Trav6d-4Q5R1I0 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Gm10493-201ENSMUST00000097270 612 ntBASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav6d-4Q5R1I0 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trav6d-4Q5R1I0 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trav6d-4Q5R1I0 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms