Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Upf3aQ3ULJ3 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 Mir5133-201ENSMUST00000174955 77 ntBASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.75■□□□□ 0.91
Upf3aQ3ULJ3 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Gm12441-201ENSMUST00000121806 588 ntBASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Upf3aQ3ULJ3 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Upf3aQ3ULJ3 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Upf3aQ3ULJ3 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.71■□□□□ 0.91
Upf3aQ3ULJ3 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Gm42911-201ENSMUST00000199360 1630 ntBASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Upf3aQ3ULJ3 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Upf3aQ3ULJ3 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Gm4968-201ENSMUST00000071458 858 ntBASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Upf3aQ3ULJ3 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3aQ3ULJ3 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3aQ3ULJ3 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Upf3aQ3ULJ3 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC20.67■□□□□ 0.9
Upf3aQ3ULJ3 Gm38205-201ENSMUST00000192243 258 ntBASIC20.67■□□□□ 0.9
Upf3aQ3ULJ3 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms