Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lig3P97386 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Lig3P97386 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Lig3P97386 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lig3P97386 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Lig3P97386 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lig3P97386 AC164883.3-201ENSMUST00000227396 1774 ntBASIC21.23■□□□□ 0.99
Lig3P97386 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Lig3P97386 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lig3P97386 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Lig3P97386 Gm18671-201ENSMUST00000214826 683 ntBASIC21.23■□□□□ 0.99
Lig3P97386 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Lig3P97386 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Lig3P97386 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
Lig3P97386 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Lig3P97386 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.22■□□□□ 0.99
Lig3P97386 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lig3P97386 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lig3P97386 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lig3P97386 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lig3P97386 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lig3P97386 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC21.22■□□□□ 0.99
Lig3P97386 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Lig3P97386 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lig3P97386 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lig3P97386 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lig3P97386 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Lig3P97386 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.21■□□□□ 0.99
Lig3P97386 Gm12669-201ENSMUST00000122162 1009 ntBASIC21.21■□□□□ 0.99
Lig3P97386 Gm40848-201ENSMUST00000221998 324 ntBASIC21.21■□□□□ 0.99
Lig3P97386 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Lig3P97386 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Lig3P97386 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Lig3P97386 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Lig3P97386 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Lig3P97386 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lig3P97386 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lig3P97386 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lig3P97386 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lig3P97386 Gm7143-201ENSMUST00000222811 859 ntBASIC21.2■□□□□ 0.98
Lig3P97386 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Lig3P97386 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Lig3P97386 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Lig3P97386 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.19■□□□□ 0.98
Lig3P97386 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Lig3P97386 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
Lig3P97386 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Lig3P97386 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Lig3P97386 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.18■□□□□ 0.98
Lig3P97386 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lig3P97386 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Lig3P97386 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.18■□□□□ 0.98
Lig3P97386 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lig3P97386 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lig3P97386 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Lig3P97386 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.18■□□□□ 0.98
Lig3P97386 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lig3P97386 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Lig3P97386 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lig3P97386 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.17■□□□□ 0.98
Lig3P97386 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lig3P97386 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Lig3P97386 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Lig3P97386 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.17■□□□□ 0.98
Lig3P97386 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Lig3P97386 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Lig3P97386 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lig3P97386 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.16■□□□□ 0.98
Lig3P97386 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lig3P97386 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lig3P97386 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lig3P97386 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lig3P97386 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.16■□□□□ 0.98
Lig3P97386 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.16■□□□□ 0.98
Lig3P97386 AV356131-201ENSMUST00000206201 750 ntBASIC21.16■□□□□ 0.98
Lig3P97386 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.16■□□□□ 0.98
Lig3P97386 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Lig3P97386 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Lig3P97386 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.16■□□□□ 0.98
Lig3P97386 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC21.15■□□□□ 0.98
Lig3P97386 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Lig3P97386 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.15■□□□□ 0.98
Lig3P97386 Gm10033-202ENSMUST00000211874 928 ntBASIC21.15■□□□□ 0.98
Lig3P97386 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Lig3P97386 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Lig3P97386 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Lig3P97386 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Lig3P97386 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Lig3P97386 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms