Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shmt1P50431 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Shmt1P50431 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shmt1P50431 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shmt1P50431 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shmt1P50431 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Shmt1P50431 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Shmt1P50431 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shmt1P50431 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Shmt1P50431 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Shmt1P50431 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Shmt1P50431 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Shmt1P50431 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Shmt1P50431 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Shmt1P50431 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Shmt1P50431 Gm11421-201ENSMUST00000122124 294 ntBASIC20.82■□□□□ 0.92
Shmt1P50431 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Shmt1P50431 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Shmt1P50431 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Shmt1P50431 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shmt1P50431 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shmt1P50431 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.81■□□□□ 0.92
Shmt1P50431 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shmt1P50431 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shmt1P50431 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.81■□□□□ 0.92
Shmt1P50431 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shmt1P50431 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shmt1P50431 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shmt1P50431 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Shmt1P50431 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Shmt1P50431 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Shmt1P50431 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Shmt1P50431 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Shmt1P50431 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Shmt1P50431 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.8■□□□□ 0.92
Shmt1P50431 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Shmt1P50431 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.8■□□□□ 0.92
Shmt1P50431 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.8■□□□□ 0.92
Shmt1P50431 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.8■□□□□ 0.92
Shmt1P50431 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Shmt1P50431 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shmt1P50431 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Shmt1P50431 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shmt1P50431 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Shmt1P50431 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shmt1P50431 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.79■□□□□ 0.92
Shmt1P50431 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shmt1P50431 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shmt1P50431 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shmt1P50431 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.79■□□□□ 0.92
Shmt1P50431 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shmt1P50431 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Shmt1P50431 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Shmt1P50431 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Shmt1P50431 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Shmt1P50431 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Shmt1P50431 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.77■□□□□ 0.92
Shmt1P50431 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.77■□□□□ 0.92
Shmt1P50431 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Shmt1P50431 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Shmt1P50431 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Shmt1P50431 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Shmt1P50431 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Shmt1P50431 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Shmt1P50431 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Shmt1P50431 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
Shmt1P50431 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC20.76■□□□□ 0.91
Shmt1P50431 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.76■□□□□ 0.91
Shmt1P50431 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Shmt1P50431 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 AA386476-201ENSMUST00000098781 1665 ntBASIC20.76■□□□□ 0.91
Shmt1P50431 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shmt1P50431 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shmt1P50431 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
Shmt1P50431 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.75■□□□□ 0.91
Shmt1P50431 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shmt1P50431 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shmt1P50431 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Shmt1P50431 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC20.74■□□□□ 0.91
Shmt1P50431 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shmt1P50431 Gm16076-201ENSMUST00000140116 480 ntTSL 3 BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms