Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdx2P43241 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdx2P43241 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdx2P43241 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.75■□□□□ 0.59
Cdx2P43241 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.75■□□□□ 0.59
Cdx2P43241 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdx2P43241 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx2P43241 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx2P43241 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx2P43241 Gm13148-201ENSMUST00000118892 745 ntBASIC18.74■□□□□ 0.59
Cdx2P43241 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.74■□□□□ 0.59
Cdx2P43241 Gm20760-201ENSMUST00000179197 648 ntBASIC18.74■□□□□ 0.59
Cdx2P43241 Gm38205-201ENSMUST00000192243 258 ntBASIC18.74■□□□□ 0.59
Cdx2P43241 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.74■□□□□ 0.59
Cdx2P43241 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx2P43241 Gm6365-201ENSMUST00000054711 744 ntBASIC18.74■□□□□ 0.59
Cdx2P43241 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx2P43241 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx2P43241 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.73■□□□□ 0.59
Cdx2P43241 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdx2P43241 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC18.73■□□□□ 0.59
Cdx2P43241 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdx2P43241 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cdx2P43241 Gm12527-201ENSMUST00000117967 564 ntBASIC18.73■□□□□ 0.59
Cdx2P43241 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.73■□□□□ 0.59
Cdx2P43241 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
Cdx2P43241 Gm22240-201ENSMUST00000175225 82 ntBASIC18.73■□□□□ 0.59
Cdx2P43241 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Cdx2P43241 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC18.73■□□□□ 0.59
Cdx2P43241 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdx2P43241 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdx2P43241 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cdx2P43241 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cdx2P43241 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.72■□□□□ 0.59
Cdx2P43241 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC18.72■□□□□ 0.59
Cdx2P43241 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Cdx2P43241 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 CT010467.1-202ENSMUST00000205406 714 ntBASIC18.72■□□□□ 0.59
Cdx2P43241 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Cdx2P43241 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC18.72■□□□□ 0.59
Cdx2P43241 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx2P43241 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Gm7290-201ENSMUST00000104990 617 ntBASIC18.71■□□□□ 0.59
Cdx2P43241 Gm12918-201ENSMUST00000120234 636 ntBASIC18.71■□□□□ 0.59
Cdx2P43241 Gm15710-201ENSMUST00000121821 636 ntBASIC18.71■□□□□ 0.59
Cdx2P43241 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC18.71■□□□□ 0.59
Cdx2P43241 Gm5075-201ENSMUST00000196916 622 ntBASIC18.71■□□□□ 0.59
Cdx2P43241 Gm5408-201ENSMUST00000197998 747 ntBASIC18.71■□□□□ 0.59
Cdx2P43241 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.71■□□□□ 0.59
Cdx2P43241 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.71■□□□□ 0.59
Cdx2P43241 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Cdx2P43241 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC18.71■□□□□ 0.59
Cdx2P43241 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx2P43241 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
Cdx2P43241 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Cdx2P43241 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.7■□□□□ 0.58
Cdx2P43241 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Gm6420-201ENSMUST00000193885 723 ntBASIC18.7■□□□□ 0.58
Cdx2P43241 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx2P43241 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
Cdx2P43241 Gm43859-201ENSMUST00000200075 1412 ntBASIC18.69■□□□□ 0.58
Cdx2P43241 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Cdx2P43241 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cdx2P43241 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC18.69■□□□□ 0.58
Cdx2P43241 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cdx2P43241 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cdx2P43241 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cdx2P43241 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cdx2P43241 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdx2P43241 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cdx2P43241 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdx2P43241 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.68■□□□□ 0.58
Cdx2P43241 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Cdx2P43241 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx2P43241 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms