Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Col5a1O88207 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Col5a1O88207 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.02■□□□□ 0.48
Col5a1O88207 Gm13148-201ENSMUST00000118892 745 ntBASIC18.02■□□□□ 0.47
Col5a1O88207 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Col5a1O88207 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Col5a1O88207 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col5a1O88207 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col5a1O88207 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col5a1O88207 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC18.01■□□□□ 0.47
Col5a1O88207 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.01■□□□□ 0.47
Col5a1O88207 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.01■□□□□ 0.47
Col5a1O88207 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col5a1O88207 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Col5a1O88207 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
Col5a1O88207 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Col5a1O88207 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Col5a1O88207 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18■□□□□ 0.47
Col5a1O88207 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC18■□□□□ 0.47
Col5a1O88207 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Col5a1O88207 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC17.99■□□□□ 0.47
Col5a1O88207 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col5a1O88207 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col5a1O88207 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col5a1O88207 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Col5a1O88207 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Col5a1O88207 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 Mir6982-201ENSMUST00000184354 68 ntBASIC17.98■□□□□ 0.47
Col5a1O88207 Gm7514-201ENSMUST00000209475 934 ntBASIC17.98■□□□□ 0.47
Col5a1O88207 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC17.98■□□□□ 0.47
Col5a1O88207 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
Col5a1O88207 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Col5a1O88207 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.98■□□□□ 0.47
Col5a1O88207 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.98■□□□□ 0.47
Col5a1O88207 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.98■□□□□ 0.47
Col5a1O88207 Gm10812-201ENSMUST00000099864 546 ntBASIC17.98■□□□□ 0.47
Col5a1O88207 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Col5a1O88207 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.97■□□□□ 0.47
Col5a1O88207 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.97■□□□□ 0.47
Col5a1O88207 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.97■□□□□ 0.47
Col5a1O88207 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Col5a1O88207 Snhg20-203ENSMUST00000182811 2153 ntBASIC17.97■□□□□ 0.47
Col5a1O88207 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Col5a1O88207 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Col5a1O88207 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Col5a1O88207 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Col5a1O88207 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Col5a1O88207 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col5a1O88207 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col5a1O88207 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col5a1O88207 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Col5a1O88207 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Col5a1O88207 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.94■□□□□ 0.46
Col5a1O88207 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Col5a1O88207 Gm13836-201ENSMUST00000121159 501 ntBASIC17.93■□□□□ 0.46
Col5a1O88207 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col5a1O88207 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.93■□□□□ 0.46
Col5a1O88207 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Col5a1O88207 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Col5a1O88207 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.93■□□□□ 0.46
Col5a1O88207 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Col5a1O88207 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.93■□□□□ 0.46
Col5a1O88207 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Col5a1O88207 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Col5a1O88207 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Col5a1O88207 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.93■□□□□ 0.46
Col5a1O88207 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col5a1O88207 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Col5a1O88207 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col5a1O88207 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col5a1O88207 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Col5a1O88207 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms