Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.26■□□□□ 0.83
Sdc4O35988 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdc4O35988 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Sdc4O35988 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sdc4O35988 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Sdc4O35988 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sdc4O35988 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sdc4O35988 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sdc4O35988 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Sdc4O35988 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC20.25■□□□□ 0.83
Sdc4O35988 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Sdc4O35988 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sdc4O35988 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Sdc4O35988 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Sdc4O35988 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sdc4O35988 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Sdc4O35988 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Sdc4O35988 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.24■□□□□ 0.83
Sdc4O35988 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC20.24■□□□□ 0.83
Sdc4O35988 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Sdc4O35988 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Sdc4O35988 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdc4O35988 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Sdc4O35988 Gm27801-201ENSMUST00000184174 223 ntBASIC20.23■□□□□ 0.83
Sdc4O35988 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdc4O35988 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Sdc4O35988 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Sdc4O35988 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Sdc4O35988 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.22■□□□□ 0.83
Sdc4O35988 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.22■□□□□ 0.83
Sdc4O35988 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Gm42778-201ENSMUST00000199644 553 ntBASIC20.22■□□□□ 0.83
Sdc4O35988 Gm42569-201ENSMUST00000200539 472 ntBASIC20.22■□□□□ 0.83
Sdc4O35988 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Sdc4O35988 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sdc4O35988 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sdc4O35988 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC20.21■□□□□ 0.83
Sdc4O35988 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Sdc4O35988 Gm18671-201ENSMUST00000214826 683 ntBASIC20.21■□□□□ 0.83
Sdc4O35988 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.21■□□□□ 0.83
Sdc4O35988 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sdc4O35988 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sdc4O35988 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.21■□□□□ 0.83
Sdc4O35988 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Sdc4O35988 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Sdc4O35988 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Sdc4O35988 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Sdc4O35988 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Sdc4O35988 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sdc4O35988 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sdc4O35988 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sdc4O35988 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.19■□□□□ 0.82
Sdc4O35988 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sdc4O35988 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sdc4O35988 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Sdc4O35988 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC20.19■□□□□ 0.82
Sdc4O35988 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Sdc4O35988 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sdc4O35988 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.18■□□□□ 0.82
Sdc4O35988 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sdc4O35988 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.18■□□□□ 0.82
Sdc4O35988 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Sdc4O35988 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sdc4O35988 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Sdc4O35988 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sdc4O35988 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sdc4O35988 Gm9988-201ENSMUST00000069786 435 ntBASIC20.17■□□□□ 0.82
Sdc4O35988 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Sdc4O35988 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Sdc4O35988 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms