Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.34■□□□□ 0.69
Chd3B1AR17 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Chd3B1AR17 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chd3B1AR17 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chd3B1AR17 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Chd3B1AR17 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Chd3B1AR17 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC19.34■□□□□ 0.69
Chd3B1AR17 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
Chd3B1AR17 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chd3B1AR17 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Chd3B1AR17 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Chd3B1AR17 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chd3B1AR17 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chd3B1AR17 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Chd3B1AR17 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Chd3B1AR17 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Chd3B1AR17 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Chd3B1AR17 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.33■□□□□ 0.69
Chd3B1AR17 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Chd3B1AR17 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Chd3B1AR17 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Chd3B1AR17 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Chd3B1AR17 Reep4-203ENSMUST00000226563 1444 ntBASIC19.32■□□□□ 0.68
Chd3B1AR17 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chd3B1AR17 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chd3B1AR17 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC19.32■□□□□ 0.68
Chd3B1AR17 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Chd3B1AR17 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Chd3B1AR17 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Chd3B1AR17 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Chd3B1AR17 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Chd3B1AR17 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Chd3B1AR17 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chd3B1AR17 AV356131-201ENSMUST00000206201 750 ntBASIC19.31■□□□□ 0.68
Chd3B1AR17 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chd3B1AR17 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chd3B1AR17 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC19.31■□□□□ 0.68
Chd3B1AR17 AC137127.1-201ENSMUST00000213466 1078 ntBASIC19.31■□□□□ 0.68
Chd3B1AR17 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Chd3B1AR17 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC19.31■□□□□ 0.68
Chd3B1AR17 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Gm42911-201ENSMUST00000199360 1630 ntBASIC19.3■□□□□ 0.68
Chd3B1AR17 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Chd3B1AR17 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.3■□□□□ 0.68
Chd3B1AR17 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Chd3B1AR17 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Chd3B1AR17 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Chd3B1AR17 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chd3B1AR17 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.29■□□□□ 0.68
Chd3B1AR17 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Chd3B1AR17 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chd3B1AR17 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chd3B1AR17 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chd3B1AR17 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chd3B1AR17 Gm7291-201ENSMUST00000199147 382 ntBASIC19.29■□□□□ 0.68
Chd3B1AR17 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Chd3B1AR17 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC19.29■□□□□ 0.68
Chd3B1AR17 Hsf1-207ENSMUST00000228371 2102 ntBASIC19.29■□□□□ 0.68
Chd3B1AR17 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC19.28■□□□□ 0.68
Chd3B1AR17 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Gm9988-201ENSMUST00000069786 435 ntBASIC19.28■□□□□ 0.68
Chd3B1AR17 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Gm37179-201ENSMUST00000194862 823 ntBASIC19.28■□□□□ 0.68
Chd3B1AR17 Gm42778-201ENSMUST00000199644 553 ntBASIC19.28■□□□□ 0.68
Chd3B1AR17 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Chd3B1AR17 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.28■□□□□ 0.68
Chd3B1AR17 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Chd3B1AR17 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Chd3B1AR17 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Chd3B1AR17 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Chd3B1AR17 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Chd3B1AR17 CT030146.1-201ENSMUST00000220919 217 ntBASIC19.27■□□□□ 0.68
Chd3B1AR17 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
Chd3B1AR17 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Chd3B1AR17 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Chd3B1AR17 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.27■□□□□ 0.67
Chd3B1AR17 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC19.26■□□□□ 0.67
Chd3B1AR17 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.26■□□□□ 0.67
Chd3B1AR17 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chd3B1AR17 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chd3B1AR17 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Chd3B1AR17 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chd3B1AR17 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Chd3B1AR17 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Chd3B1AR17 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.26■□□□□ 0.67
Chd3B1AR17 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms