Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ncor1-202ENSMUST00000037575 4246 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
Hmgb3O54879 Rint1-201ENSMUST00000030852 3298 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
Hmgb3O54879 Crebbp-205ENSMUST00000205765 7749 ntAPPRIS ALT2 TSL 5 BASIC8.23□□□□□ -1.09
Hmgb3O54879 Pla2g5-201ENSMUST00000030524 2131 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
Hmgb3O54879 Lpl-201ENSMUST00000015712 4115 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Jarid2-210ENSMUST00000173704 4135 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Mdga2-212ENSMUST00000222987 1388 ntTSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Epha4-201ENSMUST00000027451 6328 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Diablo-207ENSMUST00000145152 2588 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm12116-201ENSMUST00000131851 2770 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Fancb-203ENSMUST00000167446 2953 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Rap1gds1-201ENSMUST00000029796 3383 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Cntn2-201ENSMUST00000086521 7177 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Trak1-211ENSMUST00000211187 4043 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Pcx-204ENSMUST00000224726 4034 ntAPPRIS P3 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Spag6l-201ENSMUST00000023468 2416 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Cdadc1-202ENSMUST00000056997 2202 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Tcaf2-201ENSMUST00000031879 4497 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Ano4-202ENSMUST00000181976 1410 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Snx6-204ENSMUST00000218934 1441 ntTSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 AC102847.1-201ENSMUST00000228390 2498 ntBASIC8.22□□□□□ -1.09
Hmgb3O54879 Sh3kbp1-204ENSMUST00000112451 3914 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Synj1-210ENSMUST00000170853 7012 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Med12l-204ENSMUST00000164225 10264 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm28578-203ENSMUST00000189196 1470 ntTSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm14942-201ENSMUST00000119642 336 ntBASIC8.22□□□□□ -1.09
Hmgb3O54879 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm13605-201ENSMUST00000124489 658 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Ptpa-210ENSMUST00000136009 810 ntTSL 3 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm6485-201ENSMUST00000160676 439 ntBASIC8.22□□□□□ -1.09
Hmgb3O54879 Igkv4-54-201ENSMUST00000177697 288 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Fgfbp1-203ENSMUST00000199894 1228 ntAPPRIS P1 TSL 3 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm29797-201ENSMUST00000207856 755 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm9619-201ENSMUST00000211587 762 ntBASIC8.22□□□□□ -1.09
Hmgb3O54879 AC119177.2-201ENSMUST00000226699 629 ntBASIC8.22□□□□□ -1.09
Hmgb3O54879 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gsto1-201ENSMUST00000026050 1182 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Tceanc2-203ENSMUST00000058585 766 ntAPPRIS P1 TSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 C1ra-201ENSMUST00000068593 2981 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Rbm12-201ENSMUST00000059647 6667 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Micalcl-202ENSMUST00000051308 2399 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm15535-202ENSMUST00000148478 1519 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm7356-201ENSMUST00000186636 1527 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm7358-201ENSMUST00000189454 1527 ntBASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm45694-201ENSMUST00000212022 3251 ntBASIC8.22□□□□□ -1.09
Hmgb3O54879 Trp63-203ENSMUST00000115304 2634 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Arhgap4-205ENSMUST00000114407 3051 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Slc6a16-203ENSMUST00000213347 2865 ntAPPRIS P5 TSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Epn2-201ENSMUST00000001063 4243 ntAPPRIS P3 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Mycbp2-201ENSMUST00000159855 15233 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Gm45871-204ENSMUST00000211710 2003 ntAPPRIS P1 TSL 3 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Tmem156-201ENSMUST00000043352 1565 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Cflar-201ENSMUST00000069333 3163 ntAPPRIS P2 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Nebl-201ENSMUST00000028080 5780 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
Hmgb3O54879 Nell1-202ENSMUST00000107603 2756 ntTSL 5 BASIC8.22□□□□□ -1.09
Hmgb3O54879 Creb5-201ENSMUST00000047450 2330 ntAPPRIS P2 TSL 5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Ano4-204ENSMUST00000182341 3959 ntAPPRIS P2 TSL 5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Il6st-203ENSMUST00000183663 8678 ntAPPRIS P2 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Psg29-201ENSMUST00000075934 5445 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Nlgn3-202ENSMUST00000118111 8004 ntTSL 5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Ttc1-201ENSMUST00000048578 1438 ntAPPRIS P2 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Map3k7-204ENSMUST00000108184 5491 ntTSL 5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Dst-205ENSMUST00000182314 2643 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Nkd1-202ENSMUST00000169179 4081 ntTSL 2 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Peak1-201ENSMUST00000061552 6996 ntAPPRIS P2 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Atf3-203ENSMUST00000195117 1906 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Casc1-208ENSMUST00000204105 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 C86187-202ENSMUST00000209497 2415 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Ighg3-202ENSMUST00000223179 2414 ntAPPRIS P5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Gm26947-201ENSMUST00000182497 2929 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Hacl1-214ENSMUST00000167175 1739 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Apobec3-204ENSMUST00000175714 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 Tmem56-207ENSMUST00000155309 2230 ntAPPRIS P2 TSL 1 (best) BASIC8.21□□□□□ -1.09
Hmgb3O54879 P2ry14-206ENSMUST00000197841 2476 ntTSL 5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Cdh18-203ENSMUST00000164787 2744 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.09
Hmgb3O54879 Tle3-208ENSMUST00000160882 3523 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Rab3il1-203ENSMUST00000121418 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Sorbs1-211ENSMUST00000224667 4313 ntAPPRIS ALT2 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm14006-201ENSMUST00000122132 981 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Pradc1-204ENSMUST00000126805 953 ntTSL 2 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm23081-201ENSMUST00000157845 297 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm45711-202ENSMUST00000164175 979 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm9146-201ENSMUST00000182254 1006 ntBASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm29521-201ENSMUST00000187061 745 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Hmgb3O54879 Gm37458-201ENSMUST00000194055 410 ntBASIC8.21□□□□□ -1.1
Retrieved 100 of 76,532 protein–RNA pairs in 95.3 ms