Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm45331-201ENSMUST00000209868 554 ntBASIC8.29□□□□□ -1.08
Hmgb3O54879 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Tceal9-201ENSMUST00000048687 1019 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Aamdc-202ENSMUST00000072725 776 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Olfr1189-201ENSMUST00000090700 921 ntAPPRIS P1 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC8.29□□□□□ -1.08
Hmgb3O54879 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm19611-201ENSMUST00000216401 1865 ntBASIC8.29□□□□□ -1.08
Hmgb3O54879 Nek3-204ENSMUST00000178324 1989 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm35715-201ENSMUST00000197421 2054 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Slc5a4a-201ENSMUST00000020450 2055 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm29222-201ENSMUST00000185442 2167 ntTSL 5 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm29449-201ENSMUST00000187820 2168 ntTSL 5 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm28104-201ENSMUST00000188331 2168 ntTSL 5 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm28743-201ENSMUST00000189014 2168 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm29384-201ENSMUST00000190852 2168 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm37538-201ENSMUST00000192417 2168 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Mtch2-202ENSMUST00000111467 2281 ntTSL 5 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Car13-201ENSMUST00000029071 2299 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Map4k4-218ENSMUST00000195860 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Slco2b1-201ENSMUST00000032985 4381 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Brwd3-205ENSMUST00000150434 11619 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Cdh1-201ENSMUST00000000312 4430 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Trim2-201ENSMUST00000054990 3816 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Add2-201ENSMUST00000032069 3119 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm15947-201ENSMUST00000161395 2742 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 A1bg-201ENSMUST00000096418 1821 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
Hmgb3O54879 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
Hmgb3O54879 Tmem108-201ENSMUST00000049452 3574 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Ptbp1-206ENSMUST00000165704 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Fam124b-201ENSMUST00000058748 2855 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm31024-201ENSMUST00000207600 2353 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Drc3-201ENSMUST00000070805 2061 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm38218-201ENSMUST00000193555 4689 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm18638-201ENSMUST00000211293 1773 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 AC133934.1-201ENSMUST00000223052 1761 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm43481-201ENSMUST00000201715 3672 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Grpr-201ENSMUST00000033730 2523 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm19026-201ENSMUST00000194240 4530 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm43135-201ENSMUST00000196442 3462 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Sgsh-202ENSMUST00000100172 4223 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Rhof-204ENSMUST00000186469 4241 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Bcl11a-203ENSMUST00000109516 2329 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm32914-201ENSMUST00000203815 2228 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
Hmgb3O54879 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC8.28□□□□□ -1.08
Hmgb3O54879 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC8.28□□□□□ -1.08
Hmgb3O54879 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC8.28□□□□□ -1.08
Hmgb3O54879 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm17231-202ENSMUST00000165858 663 ntTSL 5 BASIC8.28□□□□□ -1.08
Hmgb3O54879 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm19013-201ENSMUST00000183895 1222 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm19014-201ENSMUST00000184828 1189 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm7516-201ENSMUST00000186198 706 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm38313-201ENSMUST00000191953 1266 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm8197-202ENSMUST00000193422 934 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm44304-201ENSMUST00000200509 145 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 4930430O22Rik-202ENSMUST00000202548 579 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm7880-201ENSMUST00000203748 871 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC8.28□□□□□ -1.08
Hmgb3O54879 CT485606.1-201ENSMUST00000213187 878 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 AI463170-201ENSMUST00000217839 970 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 AC140293.1-201ENSMUST00000225626 1247 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Mir194-2-201ENSMUST00000083648 86 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Smc2-201ENSMUST00000102915 5404 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Ehmt1-201ENSMUST00000046227 4554 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
Hmgb3O54879 Armcx5-201ENSMUST00000096321 2779 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Eef1b2-204ENSMUST00000129339 1939 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Oc90-201ENSMUST00000060522 1909 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Clec4f-201ENSMUST00000014686 2471 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Stx16-202ENSMUST00000087908 3865 ntAPPRIS P2 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Fcamr-201ENSMUST00000027670 1743 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Polr3f-202ENSMUST00000110017 1632 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 AC132467.2-201ENSMUST00000226306 2253 ntBASIC8.28□□□□□ -1.08
Hmgb3O54879 Specc1-201ENSMUST00000049836 6091 ntTSL 5 BASIC8.28□□□□□ -1.08
Hmgb3O54879 Rnf41-202ENSMUST00000171342 3283 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Cers3-201ENSMUST00000066475 3250 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
Hmgb3O54879 Klf17-201ENSMUST00000062747 2400 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 Myom1-202ENSMUST00000073211 5602 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
Hmgb3O54879 AC117656.2-201ENSMUST00000224931 2215 ntBASIC8.27□□□□□ -1.08
Hmgb3O54879 Actn1-202ENSMUST00000167327 2664 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
Hmgb3O54879 Gm26601-201ENSMUST00000181427 3551 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
Hmgb3O54879 AC155270.1-201ENSMUST00000221626 4028 ntBASIC8.27□□□□□ -1.08
Hmgb3O54879 Ccrl2-201ENSMUST00000111888 2459 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Gin1-203ENSMUST00000112844 2046 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Ccna1-201ENSMUST00000029368 1560 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Nckap1l-201ENSMUST00000047405 4717 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Hmgb3O54879 Eapp-204ENSMUST00000161592 4186 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Retrieved 100 of 76,532 protein–RNA pairs in 115.3 ms