Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm6019-201ENSMUST00000148369 736 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm29155-201ENSMUST00000185910 269 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm37860-201ENSMUST00000195380 1034 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 A830092H15Rik-202ENSMUST00000195446 649 ntTSL 3 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm7344-201ENSMUST00000212122 1222 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC8.34□□□□□ -1.07
Hmgb3O54879 AC122408.1-201ENSMUST00000218949 218 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm5189-201ENSMUST00000221796 261 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 CT030011.1-201ENSMUST00000221959 264 ntTSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Olfr1378-202ENSMUST00000213259 4324 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Sorbs2-215ENSMUST00000135336 6307 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm45797-201ENSMUST00000212759 1921 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Pik3c3-202ENSMUST00000115811 3084 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm8684-201ENSMUST00000195078 1564 ntBASIC8.34□□□□□ -1.07
Hmgb3O54879 Gm9992-201ENSMUST00000070059 1593 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Cyld-210ENSMUST00000211554 4638 ntAPPRIS P3 TSL 1 (best) BASIC8.34□□□□□ -1.07
Hmgb3O54879 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
Hmgb3O54879 Pla2g2d-201ENSMUST00000030528 2167 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
Hmgb3O54879 Tcp10b-201ENSMUST00000086787 2327 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.08
Hmgb3O54879 Gm14565-201ENSMUST00000140021 2494 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
Hmgb3O54879 A230009B12Rik-202ENSMUST00000159602 1810 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm44629-201ENSMUST00000206951 1840 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Arhgap28-203ENSMUST00000164647 2754 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm45597-201ENSMUST00000211524 1994 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Utrn-201ENSMUST00000076817 12382 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Frem3-201ENSMUST00000039695 6384 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Trip12-201ENSMUST00000027421 9632 ntAPPRIS P2 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Dytn-201ENSMUST00000090313 2427 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm26541-201ENSMUST00000181866 3973 ntTSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Nuggc-202ENSMUST00000150897 2745 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Vmn1r16-202ENSMUST00000227283 5813 ntAPPRIS P2 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Lig3-201ENSMUST00000021039 5957 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Anapc1-203ENSMUST00000110333 4214 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm45889-202ENSMUST00000211255 2358 ntTSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Itga2-201ENSMUST00000056117 7108 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm42868-201ENSMUST00000199168 2697 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Nwd1-209ENSMUST00000228312 10789 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
Hmgb3O54879 4930570G19Rik-201ENSMUST00000139363 3112 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Creb3l4-202ENSMUST00000107369 1404 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Polr2i-203ENSMUST00000108193 488 ntTSL 3 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm11949-201ENSMUST00000117640 372 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm11380-201ENSMUST00000118067 560 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm23045-201ENSMUST00000175041 96 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 9030616G12Rik-201ENSMUST00000181142 644 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Mir8091-201ENSMUST00000183602 139 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Mir8115-201ENSMUST00000184992 119 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Mir7686-201ENSMUST00000200604 57 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm43630-201ENSMUST00000201550 776 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Stard13-208ENSMUST00000202111 3373 ntTSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm45398-201ENSMUST00000210561 165 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 AC166165.1-201ENSMUST00000214352 874 ntTSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 2210039B01Rik-201ENSMUST00000222490 1044 ntTSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Ppil2-201ENSMUST00000023455 2333 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Pcdhb11-201ENSMUST00000053073 4419 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm7589-201ENSMUST00000085631 534 ntBASIC8.33□□□□□ -1.08
Hmgb3O54879 Ercc3-201ENSMUST00000025241 2708 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm2897-201ENSMUST00000166494 1980 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm3411-201ENSMUST00000170104 1991 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Hmgb1-201ENSMUST00000085546 2838 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 A3galt2-201ENSMUST00000030585 3390 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Ablim1-207ENSMUST00000111529 5927 ntTSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Acot11-201ENSMUST00000065253 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Numb-210ENSMUST00000154043 1929 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Fes-201ENSMUST00000080932 2762 ntAPPRIS P2 TSL 1 (best) BASIC8.33□□□□□ -1.08
Hmgb3O54879 Gm3642-201ENSMUST00000166895 1762 ntAPPRIS P5 TSL 5 BASIC8.33□□□□□ -1.08
Hmgb3O54879 Odf2-210ENSMUST00000113765 3188 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 AC154575.1-201ENSMUST00000227166 1474 ntBASIC8.32□□□□□ -1.08
Hmgb3O54879 Dqx1-201ENSMUST00000077502 3257 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Gm10603-201ENSMUST00000183512 2279 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Fanca-201ENSMUST00000035495 4485 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Etv1-204ENSMUST00000160701 1578 ntTSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Adgrl2-220ENSMUST00000200543 5509 ntAPPRIS ALT1 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Zfp386-201ENSMUST00000073551 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
Hmgb3O54879 Ube2l3-202ENSMUST00000115699 2906 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Epb41-201ENSMUST00000030739 6565 ntAPPRIS P3 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Ntrk3-206ENSMUST00000195262 2774 ntAPPRIS ALT2 TSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Pik3r3-202ENSMUST00000106490 1830 ntTSL 5 BASIC8.32□□□□□ -1.08
Hmgb3O54879 Focad-208ENSMUST00000159342 5456 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
Retrieved 100 of 76,532 protein–RNA pairs in 84.4 ms