Protein–RNA interactions for Protein: Q9D706

Rpap3, RNA polymerase II-associated protein 3, mousemouse

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap3Q9D706 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Rpap3Q9D706 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Gm10033-202ENSMUST00000211874 928 ntBASIC21.83■■□□□ 1.09
Rpap3Q9D706 Gm18671-201ENSMUST00000214826 683 ntBASIC21.83■■□□□ 1.09
Rpap3Q9D706 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rpap3Q9D706 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Rpap3Q9D706 AC152827.1-201ENSMUST00000221143 2189 ntBASIC21.82■■□□□ 1.08
Rpap3Q9D706 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Rpap3Q9D706 Gm15043-201ENSMUST00000118843 1543 ntBASIC21.82■■□□□ 1.08
Rpap3Q9D706 Gm7291-201ENSMUST00000199147 382 ntBASIC21.82■■□□□ 1.08
Rpap3Q9D706 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Rpap3Q9D706 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Rpap3Q9D706 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Rpap3Q9D706 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rpap3Q9D706 Gm27405-201ENSMUST00000184201 112 ntBASIC21.81■■□□□ 1.08
Rpap3Q9D706 Gm42778-201ENSMUST00000199644 553 ntBASIC21.81■■□□□ 1.08
Rpap3Q9D706 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Rpap3Q9D706 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Rpap3Q9D706 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC21.8■■□□□ 1.08
Rpap3Q9D706 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Rpap3Q9D706 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.79■■□□□ 1.08
Rpap3Q9D706 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Gm9988-201ENSMUST00000069786 435 ntBASIC21.78■■□□□ 1.08
Rpap3Q9D706 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Rpap3Q9D706 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Rpap3Q9D706 Cdkn3-203ENSMUST00000227149 1952 ntBASIC21.78■■□□□ 1.08
Rpap3Q9D706 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Rpap3Q9D706 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Rpap3Q9D706 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Rpap3Q9D706 AV356131-201ENSMUST00000206201 750 ntBASIC21.76■■□□□ 1.07
Rpap3Q9D706 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Rpap3Q9D706 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Rpap3Q9D706 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms