Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx56Q9D0R4 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Ddx56Q9D0R4 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddx56Q9D0R4 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx56Q9D0R4 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx56Q9D0R4 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx56Q9D0R4 Gm13241-201ENSMUST00000094493 780 ntBASIC20.74■□□□□ 0.91
Ddx56Q9D0R4 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Ddx56Q9D0R4 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx56Q9D0R4 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddx56Q9D0R4 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddx56Q9D0R4 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddx56Q9D0R4 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Ddx56Q9D0R4 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddx56Q9D0R4 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddx56Q9D0R4 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ddx56Q9D0R4 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ddx56Q9D0R4 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Ddx56Q9D0R4 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Gm21956-201ENSMUST00000179946 522 ntBASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ddx56Q9D0R4 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC20.69■□□□□ 0.9
Ddx56Q9D0R4 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx56Q9D0R4 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Ddx56Q9D0R4 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx56Q9D0R4 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Ddx56Q9D0R4 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx56Q9D0R4 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.68■□□□□ 0.9
Ddx56Q9D0R4 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ddx56Q9D0R4 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Gm10209-201ENSMUST00000203397 1607 ntBASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ddx56Q9D0R4 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ddx56Q9D0R4 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ddx56Q9D0R4 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ddx56Q9D0R4 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms