Protein–RNA interactions for Protein: Q99K46

Usp11, Ubiquitin carboxyl-terminal hydrolase 11, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp11Q99K46 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Usp11Q99K46 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC20.67■□□□□ 0.9
Usp11Q99K46 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Usp11Q99K46 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
Usp11Q99K46 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp11Q99K46 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp11Q99K46 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.67■□□□□ 0.9
Usp11Q99K46 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp11Q99K46 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Usp11Q99K46 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC20.66■□□□□ 0.9
Usp11Q99K46 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Gm13241-201ENSMUST00000094493 780 ntBASIC20.66■□□□□ 0.9
Usp11Q99K46 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Usp11Q99K46 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp11Q99K46 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp11Q99K46 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp11Q99K46 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp11Q99K46 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC20.65■□□□□ 0.9
Usp11Q99K46 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp11Q99K46 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.65■□□□□ 0.9
Usp11Q99K46 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp11Q99K46 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp11Q99K46 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp11Q99K46 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp11Q99K46 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp11Q99K46 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp11Q99K46 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Usp11Q99K46 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp11Q99K46 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp11Q99K46 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Usp11Q99K46 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp11Q99K46 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp11Q99K46 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20.63■□□□□ 0.89
Usp11Q99K46 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Krt8-ps-201ENSMUST00000208495 945 ntBASIC20.63■□□□□ 0.89
Usp11Q99K46 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 AC152827.1-201ENSMUST00000221143 2189 ntBASIC20.63■□□□□ 0.89
Usp11Q99K46 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp11Q99K46 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp11Q99K46 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp11Q99K46 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp11Q99K46 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp11Q99K46 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.62■□□□□ 0.89
Usp11Q99K46 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.62■□□□□ 0.89
Usp11Q99K46 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.62■□□□□ 0.89
Usp11Q99K46 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp11Q99K46 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp11Q99K46 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp11Q99K46 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp11Q99K46 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp11Q99K46 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp11Q99K46 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp11Q99K46 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp11Q99K46 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp11Q99K46 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp11Q99K46 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp11Q99K46 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp11Q99K46 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
Usp11Q99K46 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp11Q99K46 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp11Q99K46 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC20.6■□□□□ 0.89
Usp11Q99K46 Gm21956-201ENSMUST00000179946 522 ntBASIC20.6■□□□□ 0.89
Usp11Q99K46 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.6■□□□□ 0.89
Usp11Q99K46 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp11Q99K46 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp11Q99K46 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.59■□□□□ 0.89
Usp11Q99K46 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Usp11Q99K46 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
Usp11Q99K46 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp11Q99K46 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Usp11Q99K46 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
Usp11Q99K46 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.59■□□□□ 0.89
Usp11Q99K46 AC122428.2-201ENSMUST00000216321 1832 ntBASIC20.59■□□□□ 0.89
Usp11Q99K46 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp11Q99K46 Dapk1-207ENSMUST00000226059 5009 ntBASIC20.58■□□□□ 0.89
Usp11Q99K46 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp11Q99K46 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp11Q99K46 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp11Q99K46 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Usp11Q99K46 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp11Q99K46 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp11Q99K46 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms