Protein–RNA interactions for Protein: Q8VEE4

Rpa1, Replication protein A 70 kDa DNA-binding subunit, mousemouse

Known RBP Predictions only

Length 623 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa1Q8VEE4 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa1Q8VEE4 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa1Q8VEE4 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Rpa1Q8VEE4 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
Rpa1Q8VEE4 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC19.77■□□□□ 0.75
Rpa1Q8VEE4 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa1Q8VEE4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa1Q8VEE4 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa1Q8VEE4 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.76■□□□□ 0.75
Rpa1Q8VEE4 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa1Q8VEE4 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa1Q8VEE4 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Rpa1Q8VEE4 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa1Q8VEE4 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.74■□□□□ 0.75
Rpa1Q8VEE4 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa1Q8VEE4 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa1Q8VEE4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa1Q8VEE4 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa1Q8VEE4 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa1Q8VEE4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa1Q8VEE4 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.73■□□□□ 0.75
Rpa1Q8VEE4 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa1Q8VEE4 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa1Q8VEE4 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa1Q8VEE4 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpa1Q8VEE4 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpa1Q8VEE4 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpa1Q8VEE4 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Rpa1Q8VEE4 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Rpa1Q8VEE4 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms