Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Clrn1Q8K445 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clrn1Q8K445 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
Clrn1Q8K445 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.6■□□□□ 0.57
Clrn1Q8K445 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clrn1Q8K445 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Clrn1Q8K445 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clrn1Q8K445 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Clrn1Q8K445 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Clrn1Q8K445 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Zbed3-201ENSMUST00000045909 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Clrn1Q8K445 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Clrn1Q8K445 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.58■□□□□ 0.57
Clrn1Q8K445 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Clrn1Q8K445 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Clrn1Q8K445 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC18.58■□□□□ 0.56
Clrn1Q8K445 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.58■□□□□ 0.56
Clrn1Q8K445 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
Clrn1Q8K445 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Clrn1Q8K445 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.58■□□□□ 0.56
Clrn1Q8K445 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Clrn1Q8K445 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clrn1Q8K445 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.57■□□□□ 0.56
Clrn1Q8K445 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Clrn1Q8K445 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Clrn1Q8K445 Gm15043-201ENSMUST00000118843 1543 ntBASIC18.56■□□□□ 0.56
Clrn1Q8K445 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Clrn1Q8K445 Gm43137-201ENSMUST00000198052 594 ntBASIC18.56■□□□□ 0.56
Clrn1Q8K445 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Clrn1Q8K445 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Clrn1Q8K445 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Gm43909-201ENSMUST00000203443 1876 ntBASIC18.55■□□□□ 0.56
Clrn1Q8K445 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
Clrn1Q8K445 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.55■□□□□ 0.56
Clrn1Q8K445 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Clrn1Q8K445 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC18.54■□□□□ 0.56
Clrn1Q8K445 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Gm5576-201ENSMUST00000075809 1236 ntBASIC18.54■□□□□ 0.56
Clrn1Q8K445 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Clrn1Q8K445 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.53■□□□□ 0.56
Clrn1Q8K445 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clrn1Q8K445 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
Clrn1Q8K445 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.52■□□□□ 0.56
Clrn1Q8K445 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clrn1Q8K445 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Clrn1Q8K445 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Clrn1Q8K445 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms