Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Brf1Q8CFK2 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC23.88■■□□□ 1.41
Brf1Q8CFK2 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
Brf1Q8CFK2 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Brf1Q8CFK2 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Brf1Q8CFK2 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC23.87■■□□□ 1.41
Brf1Q8CFK2 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
Brf1Q8CFK2 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Brf1Q8CFK2 Gm6802-201ENSMUST00000167843 1983 ntBASIC23.87■■□□□ 1.41
Brf1Q8CFK2 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Brf1Q8CFK2 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Gm45417-201ENSMUST00000209533 758 ntBASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Brf1Q8CFK2 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Brf1Q8CFK2 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Brf1Q8CFK2 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Spcs1-204ENSMUST00000226782 949 ntBASIC23.84■■□□□ 1.41
Brf1Q8CFK2 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Brf1Q8CFK2 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Mir7075-201ENSMUST00000184187 82 ntBASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Brf1Q8CFK2 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC23.83■■□□□ 1.4
Brf1Q8CFK2 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
Brf1Q8CFK2 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Brf1Q8CFK2 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Gm20634-201ENSMUST00000090779 2956 ntBASIC23.81■■□□□ 1.4
Brf1Q8CFK2 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC23.81■■□□□ 1.4
Brf1Q8CFK2 Klhl32-201ENSMUST00000084781 2287 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Gm7160-202ENSMUST00000188519 1027 ntBASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Brf1Q8CFK2 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
Brf1Q8CFK2 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Brf1Q8CFK2 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Brf1Q8CFK2 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Brf1Q8CFK2 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC23.79■■□□□ 1.4
Brf1Q8CFK2 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Brf1Q8CFK2 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC23.79■■□□□ 1.4
Brf1Q8CFK2 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC23.79■■□□□ 1.4
Brf1Q8CFK2 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
Brf1Q8CFK2 Flvcr1-202ENSMUST00000191946 1216 ntBASIC23.78■■□□□ 1.4
Brf1Q8CFK2 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Brf1Q8CFK2 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Brf1Q8CFK2 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Brf1Q8CFK2 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms