Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim9Q8C7M3 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim9Q8C7M3 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.08
Trim9Q8C7M3 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trim9Q8C7M3 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.08
Trim9Q8C7M3 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Trim9Q8C7M3 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.82■■□□□ 1.08
Trim9Q8C7M3 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Gm13241-201ENSMUST00000094493 780 ntBASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim9Q8C7M3 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC21.8■■□□□ 1.08
Trim9Q8C7M3 AC140930.3-201ENSMUST00000222935 274 ntBASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim9Q8C7M3 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Cers2-201ENSMUST00000015858 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Trim9Q8C7M3 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Trim9Q8C7M3 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim9Q8C7M3 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim9Q8C7M3 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC21.77■■□□□ 1.08
Trim9Q8C7M3 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Trim9Q8C7M3 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Trim9Q8C7M3 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim9Q8C7M3 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC21.77■■□□□ 1.07
Trim9Q8C7M3 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Trim9Q8C7M3 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
Trim9Q8C7M3 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim9Q8C7M3 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim9Q8C7M3 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
Trim9Q8C7M3 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim9Q8C7M3 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC21.75■■□□□ 1.07
Trim9Q8C7M3 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 185.5 ms