Protein–RNA interactions for Protein: Q8BZT2

Sh3rf2, Putative E3 ubiquitin-protein ligase SH3RF2, mousemouse

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf2Q8BZT2 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Sh3rf2Q8BZT2 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Sh3rf2Q8BZT2 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf2Q8BZT2 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf2Q8BZT2 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf2Q8BZT2 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Sh3rf2Q8BZT2 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Sh3rf2Q8BZT2 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Gm29257-201ENSMUST00000186115 639 ntBASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Gm9988-201ENSMUST00000069786 435 ntBASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Sh3rf2Q8BZT2 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Sh3rf2Q8BZT2 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC20.03■□□□□ 0.8
Sh3rf2Q8BZT2 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC20.03■□□□□ 0.8
Sh3rf2Q8BZT2 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
Sh3rf2Q8BZT2 AV356131-201ENSMUST00000206201 750 ntBASIC20.03■□□□□ 0.8
Sh3rf2Q8BZT2 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.03■□□□□ 0.8
Sh3rf2Q8BZT2 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Sh3rf2Q8BZT2 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Sh3rf2Q8BZT2 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf2Q8BZT2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf2Q8BZT2 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf2Q8BZT2 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Sh3rf2Q8BZT2 Gm14281-201ENSMUST00000121700 1294 ntBASIC20.02■□□□□ 0.8
Sh3rf2Q8BZT2 Gm27801-201ENSMUST00000184174 223 ntBASIC20.02■□□□□ 0.8
Sh3rf2Q8BZT2 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Sh3rf2Q8BZT2 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf2Q8BZT2 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.02■□□□□ 0.79
Sh3rf2Q8BZT2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Sh3rf2Q8BZT2 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Sh3rf2Q8BZT2 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf2Q8BZT2 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.01■□□□□ 0.79
Sh3rf2Q8BZT2 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf2Q8BZT2 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sh3rf2Q8BZT2 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Sh3rf2Q8BZT2 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Sh3rf2Q8BZT2 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sh3rf2Q8BZT2 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sh3rf2Q8BZT2 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 15.1 ms