Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
Chd4Q6PDQ2 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Chd4Q6PDQ2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Chd4Q6PDQ2 AC154266.1-201ENSMUST00000223190 503 ntBASIC26.25■■□□□ 1.79
Chd4Q6PDQ2 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Chd4Q6PDQ2 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Chd4Q6PDQ2 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Chd4Q6PDQ2 Gm42911-201ENSMUST00000199360 1630 ntBASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Gm13146-201ENSMUST00000118508 780 ntBASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
Chd4Q6PDQ2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Chd4Q6PDQ2 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Chd4Q6PDQ2 CT010467.1-202ENSMUST00000205406 714 ntBASIC26.23■■□□□ 1.79
Chd4Q6PDQ2 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Chd4Q6PDQ2 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC26.23■■□□□ 1.79
Chd4Q6PDQ2 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Chd4Q6PDQ2 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
Chd4Q6PDQ2 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Gm7514-201ENSMUST00000209475 934 ntBASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Chd4Q6PDQ2 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC26.2■■□□□ 1.79
Chd4Q6PDQ2 Snhg20-203ENSMUST00000182811 2153 ntBASIC26.2■■□□□ 1.79
Chd4Q6PDQ2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Chd4Q6PDQ2 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC26.2■■□□□ 1.79
Chd4Q6PDQ2 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC26.2■■□□□ 1.79
Chd4Q6PDQ2 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC26.2■■□□□ 1.79
Chd4Q6PDQ2 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC26.2■■□□□ 1.79
Chd4Q6PDQ2 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Chd4Q6PDQ2 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 Gm43859-201ENSMUST00000200075 1412 ntBASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC26.19■■□□□ 1.78
Chd4Q6PDQ2 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC26.18■■□□□ 1.78
Chd4Q6PDQ2 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC26.18■■□□□ 1.78
Chd4Q6PDQ2 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Chd4Q6PDQ2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC26.18■■□□□ 1.78
Chd4Q6PDQ2 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Chd4Q6PDQ2 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
Chd4Q6PDQ2 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Chd4Q6PDQ2 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Chd4Q6PDQ2 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Chd4Q6PDQ2 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
Chd4Q6PDQ2 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Chd4Q6PDQ2 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
Chd4Q6PDQ2 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Chd4Q6PDQ2 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Chd4Q6PDQ2 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Chd4Q6PDQ2 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 AC112142.1-201ENSMUST00000228796 918 ntBASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC26.15■■□□□ 1.78
Chd4Q6PDQ2 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Chd4Q6PDQ2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
Chd4Q6PDQ2 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Chd4Q6PDQ2 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Chd4Q6PDQ2 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
Chd4Q6PDQ2 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.77
Chd4Q6PDQ2 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Chd4Q6PDQ2 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
Chd4Q6PDQ2 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Chd4Q6PDQ2 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Chd4Q6PDQ2 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Chd4Q6PDQ2 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Chd4Q6PDQ2 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC26.12■■□□□ 1.77
Chd4Q6PDQ2 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Chd4Q6PDQ2 Gm37035-201ENSMUST00000194809 2148 ntBASIC26.12■■□□□ 1.77
Chd4Q6PDQ2 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms