Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Etf1-202ENSMUST00000180351 108 ntBASIC20.33■□□□□ 0.85
Six1Q62231 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Six1Q62231 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Six1Q62231 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Six1Q62231 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Six1Q62231 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.33■□□□□ 0.84
Six1Q62231 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Six1Q62231 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Six1Q62231 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
Six1Q62231 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Six1Q62231 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Six1Q62231 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Six1Q62231 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Six1Q62231 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Six1Q62231 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Six1Q62231 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Six1Q62231 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Six1Q62231 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Six1Q62231 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Six1Q62231 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Six1Q62231 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Six1Q62231 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC20.3■□□□□ 0.84
Six1Q62231 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
Six1Q62231 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Six1Q62231 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Six1Q62231 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Six1Q62231 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Six1Q62231 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six1Q62231 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.29■□□□□ 0.84
Six1Q62231 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six1Q62231 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six1Q62231 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six1Q62231 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six1Q62231 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Six1Q62231 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.29■□□□□ 0.84
Six1Q62231 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Six1Q62231 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20.28■□□□□ 0.84
Six1Q62231 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
Six1Q62231 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.28■□□□□ 0.84
Six1Q62231 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.28■□□□□ 0.84
Six1Q62231 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC20.28■□□□□ 0.84
Six1Q62231 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.28■□□□□ 0.84
Six1Q62231 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Six1Q62231 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Six1Q62231 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Six1Q62231 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six1Q62231 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC20.27■□□□□ 0.84
Six1Q62231 Gm15546-201ENSMUST00000122095 826 ntBASIC20.27■□□□□ 0.84
Six1Q62231 Gm22238-201ENSMUST00000175222 88 ntBASIC20.27■□□□□ 0.84
Six1Q62231 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Six1Q62231 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.27■□□□□ 0.83
Six1Q62231 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Six1Q62231 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.26■□□□□ 0.83
Six1Q62231 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
Six1Q62231 Gm9959-201ENSMUST00000068277 390 ntBASIC20.26■□□□□ 0.83
Six1Q62231 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.26■□□□□ 0.83
Six1Q62231 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Six1Q62231 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Six1Q62231 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six1Q62231 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six1Q62231 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six1Q62231 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Six1Q62231 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six1Q62231 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six1Q62231 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six1Q62231 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.24■□□□□ 0.83
Six1Q62231 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six1Q62231 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Six1Q62231 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six1Q62231 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Six1Q62231 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.23■□□□□ 0.83
Six1Q62231 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Six1Q62231 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms