Protein–RNA interactions for Protein: Q61466

Smarcd1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, mousemouse

Known RBP Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd1Q61466 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarcd1Q61466 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Smarcd1Q61466 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Smarcd1Q61466 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.63■□□□□ 0.89
Smarcd1Q61466 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Smarcd1Q61466 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Smarcd1Q61466 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarcd1Q61466 AC137127.1-201ENSMUST00000213466 1078 ntBASIC20.62■□□□□ 0.89
Smarcd1Q61466 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Smarcd1Q61466 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Smarcd1Q61466 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Fam207a-201ENSMUST00000045454 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.6■□□□□ 0.89
Smarcd1Q61466 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC20.6■□□□□ 0.89
Smarcd1Q61466 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Smarcd1Q61466 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Smarcd1Q61466 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smarcd1Q61466 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Smarcd1Q61466 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.58■□□□□ 0.89
Smarcd1Q61466 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.58■□□□□ 0.89
Smarcd1Q61466 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC20.58■□□□□ 0.89
Smarcd1Q61466 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC20.58■□□□□ 0.89
Smarcd1Q61466 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Smarcd1Q61466 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Smarcd1Q61466 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarcd1Q61466 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.57■□□□□ 0.88
Smarcd1Q61466 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarcd1Q61466 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Smarcd1Q61466 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Smarcd1Q61466 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC20.57■□□□□ 0.88
Smarcd1Q61466 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smarcd1Q61466 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smarcd1Q61466 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarcd1Q61466 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Smarcd1Q61466 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarcd1Q61466 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smarcd1Q61466 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms