Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Celf6-202ENSMUST00000118164 1583 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Usf1Q61069 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usf1Q61069 Gm12527-201ENSMUST00000117967 564 ntBASIC18.05■□□□□ 0.48
Usf1Q61069 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Usf1Q61069 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usf1Q61069 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usf1Q61069 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC18.04■□□□□ 0.48
Usf1Q61069 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Usf1Q61069 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.04■□□□□ 0.48
Usf1Q61069 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usf1Q61069 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usf1Q61069 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.03■□□□□ 0.48
Usf1Q61069 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.03■□□□□ 0.48
Usf1Q61069 Gm5408-201ENSMUST00000197998 747 ntBASIC18.03■□□□□ 0.48
Usf1Q61069 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Usf1Q61069 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Usf1Q61069 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC18.03■□□□□ 0.48
Usf1Q61069 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Usf1Q61069 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Usf1Q61069 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usf1Q61069 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usf1Q61069 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usf1Q61069 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usf1Q61069 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.02■□□□□ 0.48
Usf1Q61069 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Usf1Q61069 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
Usf1Q61069 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Usf1Q61069 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
Usf1Q61069 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Usf1Q61069 Gm7290-201ENSMUST00000104990 617 ntBASIC18.01■□□□□ 0.47
Usf1Q61069 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC18.01■□□□□ 0.47
Usf1Q61069 Gm12918-201ENSMUST00000120234 636 ntBASIC18.01■□□□□ 0.47
Usf1Q61069 Gm15710-201ENSMUST00000121821 636 ntBASIC18.01■□□□□ 0.47
Usf1Q61069 Gm5075-201ENSMUST00000196916 622 ntBASIC18.01■□□□□ 0.47
Usf1Q61069 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC18.01■□□□□ 0.47
Usf1Q61069 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC18.01■□□□□ 0.47
Usf1Q61069 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC18.01■□□□□ 0.47
Usf1Q61069 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usf1Q61069 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usf1Q61069 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usf1Q61069 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Usf1Q61069 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.01■□□□□ 0.47
Usf1Q61069 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usf1Q61069 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usf1Q61069 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usf1Q61069 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18■□□□□ 0.47
Usf1Q61069 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Usf1Q61069 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Usf1Q61069 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18■□□□□ 0.47
Usf1Q61069 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC18■□□□□ 0.47
Usf1Q61069 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Usf1Q61069 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC17.99■□□□□ 0.47
Usf1Q61069 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Gm13148-201ENSMUST00000118892 745 ntBASIC17.99■□□□□ 0.47
Usf1Q61069 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Usf1Q61069 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC17.99■□□□□ 0.47
Usf1Q61069 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Gm6365-201ENSMUST00000054711 744 ntBASIC17.99■□□□□ 0.47
Usf1Q61069 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Usf1Q61069 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Usf1Q61069 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC17.99■□□□□ 0.47
Usf1Q61069 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.98■□□□□ 0.47
Usf1Q61069 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usf1Q61069 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.98■□□□□ 0.47
Usf1Q61069 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usf1Q61069 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Usf1Q61069 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Usf1Q61069 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.98■□□□□ 0.47
Usf1Q61069 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usf1Q61069 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usf1Q61069 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Usf1Q61069 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Usf1Q61069 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
Usf1Q61069 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.97■□□□□ 0.47
Usf1Q61069 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Usf1Q61069 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Usf1Q61069 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Usf1Q61069 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usf1Q61069 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Usf1Q61069 Gm13146-201ENSMUST00000118508 780 ntBASIC17.96■□□□□ 0.47
Usf1Q61069 Gm13168-201ENSMUST00000121771 632 ntBASIC17.96■□□□□ 0.47
Usf1Q61069 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usf1Q61069 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Usf1Q61069 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Usf1Q61069 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.96■□□□□ 0.47
Usf1Q61069 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms