Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trav6d-4Q5R1I0 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trav6d-4Q5R1I0 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Gm11421-201ENSMUST00000122124 294 ntBASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trav6d-4Q5R1I0 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC16.58■□□□□ 0.25
Trav6d-4Q5R1I0 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Trav6d-4Q5R1I0 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trav6d-4Q5R1I0 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trav6d-4Q5R1I0 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trav6d-4Q5R1I0 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Gm38160-201ENSMUST00000193090 2499 ntBASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Gm18284-201ENSMUST00000172604 624 ntBASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 AC137127.1-201ENSMUST00000213466 1078 ntBASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Gm43006-201ENSMUST00000197702 1602 ntBASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav6d-4Q5R1I0 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms