Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC32.68■■■□□ 2.82
Ccdc88bQ4QRL3 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
Ccdc88bQ4QRL3 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC32.67■■■□□ 2.82
Ccdc88bQ4QRL3 Ap3s1-204ENSMUST00000225520 957 ntBASIC32.67■■■□□ 2.82
Ccdc88bQ4QRL3 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Ccdc88bQ4QRL3 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Ccdc88bQ4QRL3 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
Ccdc88bQ4QRL3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC32.67■■■□□ 2.82
Ccdc88bQ4QRL3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
Ccdc88bQ4QRL3 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
Ccdc88bQ4QRL3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
Ccdc88bQ4QRL3 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC32.66■■■□□ 2.82
Ccdc88bQ4QRL3 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC32.66■■■□□ 2.82
Ccdc88bQ4QRL3 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
Ccdc88bQ4QRL3 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
Ccdc88bQ4QRL3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC32.65■■■□□ 2.82
Ccdc88bQ4QRL3 Gm37035-201ENSMUST00000194809 2148 ntBASIC32.65■■■□□ 2.82
Ccdc88bQ4QRL3 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
Ccdc88bQ4QRL3 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC32.65■■■□□ 2.82
Ccdc88bQ4QRL3 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
Ccdc88bQ4QRL3 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
Ccdc88bQ4QRL3 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
Ccdc88bQ4QRL3 Gm42778-201ENSMUST00000199644 553 ntBASIC32.64■■■□□ 2.82
Ccdc88bQ4QRL3 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC32.64■■■□□ 2.82
Ccdc88bQ4QRL3 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC32.64■■■□□ 2.82
Ccdc88bQ4QRL3 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC32.64■■■□□ 2.82
Ccdc88bQ4QRL3 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Ccdc88bQ4QRL3 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC32.63■■■□□ 2.81
Ccdc88bQ4QRL3 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC32.62■■■□□ 2.81
Ccdc88bQ4QRL3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC32.62■■■□□ 2.81
Ccdc88bQ4QRL3 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Ccdc88bQ4QRL3 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
Ccdc88bQ4QRL3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
Ccdc88bQ4QRL3 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC32.62■■■□□ 2.81
Ccdc88bQ4QRL3 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
Ccdc88bQ4QRL3 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
Ccdc88bQ4QRL3 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC32.61■■■□□ 2.81
Ccdc88bQ4QRL3 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
Ccdc88bQ4QRL3 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC32.6■■■□□ 2.81
Ccdc88bQ4QRL3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC32.6■■■□□ 2.81
Ccdc88bQ4QRL3 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC32.6■■■□□ 2.81
Ccdc88bQ4QRL3 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Gm42911-201ENSMUST00000199360 1630 ntBASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
Ccdc88bQ4QRL3 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Ccdc88bQ4QRL3 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
Ccdc88bQ4QRL3 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.81
Ccdc88bQ4QRL3 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Gm12669-201ENSMUST00000122162 1009 ntBASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
Ccdc88bQ4QRL3 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Ccdc88bQ4QRL3 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
Ccdc88bQ4QRL3 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC32.56■■■□□ 2.8
Ccdc88bQ4QRL3 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
Ccdc88bQ4QRL3 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC32.55■■■□□ 2.8
Ccdc88bQ4QRL3 CT010467.1-202ENSMUST00000205406 714 ntBASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 Gm13042-201ENSMUST00000119244 1955 ntBASIC32.54■■■□□ 2.8
Ccdc88bQ4QRL3 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
Ccdc88bQ4QRL3 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Ccdc88bQ4QRL3 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Ccdc88bQ4QRL3 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
Ccdc88bQ4QRL3 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
Ccdc88bQ4QRL3 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC32.53■■■□□ 2.8
Ccdc88bQ4QRL3 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Ccdc88bQ4QRL3 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
Ccdc88bQ4QRL3 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC32.51■■■□□ 2.79
Ccdc88bQ4QRL3 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
Ccdc88bQ4QRL3 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC32.51■■■□□ 2.79
Ccdc88bQ4QRL3 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
Ccdc88bQ4QRL3 Gm13146-201ENSMUST00000118508 780 ntBASIC32.5■■■□□ 2.79
Ccdc88bQ4QRL3 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
Ccdc88bQ4QRL3 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC32.5■■■□□ 2.79
Ccdc88bQ4QRL3 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.5■■■□□ 2.79
Ccdc88bQ4QRL3 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
Ccdc88bQ4QRL3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC32.49■■■□□ 2.79
Ccdc88bQ4QRL3 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC32.49■■■□□ 2.79
Ccdc88bQ4QRL3 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms