Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ddb1Q3U1J4 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Ddb1Q3U1J4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC25.42■■□□□ 1.66
Ddb1Q3U1J4 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Ddb1Q3U1J4 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC25.41■■□□□ 1.66
Ddb1Q3U1J4 Gm6211-202ENSMUST00000167849 925 ntBASIC25.41■■□□□ 1.66
Ddb1Q3U1J4 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC25.41■■□□□ 1.66
Ddb1Q3U1J4 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ddb1Q3U1J4 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Ddb1Q3U1J4 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
Ddb1Q3U1J4 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Mir6982-201ENSMUST00000184354 68 ntBASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Gm38205-201ENSMUST00000192243 258 ntBASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
Ddb1Q3U1J4 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Ddb1Q3U1J4 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
Ddb1Q3U1J4 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
Ddb1Q3U1J4 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC25.38■■□□□ 1.65
Ddb1Q3U1J4 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
Ddb1Q3U1J4 Gm7977-201ENSMUST00000193787 748 ntBASIC25.38■■□□□ 1.65
Ddb1Q3U1J4 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC25.38■■□□□ 1.65
Ddb1Q3U1J4 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
Ddb1Q3U1J4 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
Ddb1Q3U1J4 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Gm37415-201ENSMUST00000192265 2054 ntBASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Gm10655-201ENSMUST00000098658 1397 ntBASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Ddb1Q3U1J4 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC25.36■■□□□ 1.65
Ddb1Q3U1J4 Trmt13-210ENSMUST00000198454 880 ntBASIC25.36■■□□□ 1.65
Ddb1Q3U1J4 Gm44878-201ENSMUST00000205812 1295 ntBASIC25.36■■□□□ 1.65
Ddb1Q3U1J4 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ddb1Q3U1J4 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Ddb1Q3U1J4 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Ddb1Q3U1J4 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Ddb1Q3U1J4 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ddb1Q3U1J4 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Ddb1Q3U1J4 AC122769.4-201ENSMUST00000228166 901 ntBASIC25.35■■□□□ 1.65
Ddb1Q3U1J4 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
Ddb1Q3U1J4 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
Ddb1Q3U1J4 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC25.35■■□□□ 1.65
Ddb1Q3U1J4 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Gm13181-201ENSMUST00000120117 1069 ntBASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Ddb1Q3U1J4 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
Ddb1Q3U1J4 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.64
Ddb1Q3U1J4 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Gm13534-201ENSMUST00000121169 513 ntBASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 AC135963.1-201ENSMUST00000211640 717 ntBASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 AC122428.2-201ENSMUST00000216321 1832 ntBASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Ddb1Q3U1J4 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Ddb1Q3U1J4 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
Ddb1Q3U1J4 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ddb1Q3U1J4 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ddb1Q3U1J4 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ddb1Q3U1J4 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Ddb1Q3U1J4 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
Ddb1Q3U1J4 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
Ddb1Q3U1J4 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC25.3■■□□□ 1.64
Ddb1Q3U1J4 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Ddb1Q3U1J4 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
Ddb1Q3U1J4 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Ddb1Q3U1J4 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC25.28■■□□□ 1.64
Ddb1Q3U1J4 Gm29241-201ENSMUST00000189260 1096 ntBASIC25.28■■□□□ 1.64
Ddb1Q3U1J4 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms