Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rfx3P48381 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rfx3P48381 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rfx3P48381 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC17.76■□□□□ 0.43
Rfx3P48381 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Rfx3P48381 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC17.76■□□□□ 0.43
Rfx3P48381 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Rfx3P48381 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Rfx3P48381 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC17.76■□□□□ 0.43
Rfx3P48381 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rfx3P48381 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Gm9870-201ENSMUST00000063874 645 ntBASIC17.75■□□□□ 0.43
Rfx3P48381 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rfx3P48381 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx3P48381 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Rfx3P48381 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx3P48381 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx3P48381 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx3P48381 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rfx3P48381 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx3P48381 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx3P48381 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC17.73■□□□□ 0.43
Rfx3P48381 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx3P48381 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx3P48381 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC17.73■□□□□ 0.43
Rfx3P48381 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx3P48381 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx3P48381 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Rfx3P48381 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx3P48381 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx3P48381 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx3P48381 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx3P48381 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx3P48381 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx3P48381 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.72■□□□□ 0.43
Rfx3P48381 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Rfx3P48381 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx3P48381 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx3P48381 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Rfx3P48381 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC17.71■□□□□ 0.43
Rfx3P48381 Rps24-207ENSMUST00000224568 714 ntBASIC17.71■□□□□ 0.43
Rfx3P48381 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx3P48381 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx3P48381 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Rfx3P48381 AC166356.1-201ENSMUST00000228236 1426 ntBASIC17.71■□□□□ 0.43
Rfx3P48381 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.71■□□□□ 0.43
Rfx3P48381 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Rfx3P48381 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.7■□□□□ 0.42
Rfx3P48381 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx3P48381 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx3P48381 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
Rfx3P48381 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC17.7■□□□□ 0.42
Rfx3P48381 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC17.7■□□□□ 0.42
Rfx3P48381 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx3P48381 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.7■□□□□ 0.42
Rfx3P48381 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx3P48381 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx3P48381 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Rfx3P48381 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Rfx3P48381 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC17.69■□□□□ 0.42
Rfx3P48381 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC17.69■□□□□ 0.42
Rfx3P48381 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC17.69■□□□□ 0.42
Rfx3P48381 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Rfx3P48381 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.69■□□□□ 0.42
Rfx3P48381 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Rfx3P48381 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
Rfx3P48381 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Gm45102-201ENSMUST00000207427 857 ntBASIC17.68■□□□□ 0.42
Rfx3P48381 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Rfx3P48381 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Rfx3P48381 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Rfx3P48381 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC17.67■□□□□ 0.42
Rfx3P48381 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Rfx3P48381 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms