Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Cdx2P43241 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx2P43241 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx2P43241 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.84■□□□□ 0.61
Cdx2P43241 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdx2P43241 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.84■□□□□ 0.61
Cdx2P43241 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
Cdx2P43241 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cdx2P43241 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.84■□□□□ 0.61
Cdx2P43241 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Cdx2P43241 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cdx2P43241 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Cdx2P43241 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdx2P43241 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx2P43241 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
Cdx2P43241 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx2P43241 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx2P43241 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx2P43241 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx2P43241 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdx2P43241 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cdx2P43241 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.83■□□□□ 0.6
Cdx2P43241 Gm4968-201ENSMUST00000071458 858 ntBASIC18.83■□□□□ 0.6
Cdx2P43241 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cdx2P43241 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdx2P43241 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cdx2P43241 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx2P43241 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx2P43241 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx2P43241 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.82■□□□□ 0.6
Cdx2P43241 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx2P43241 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.82■□□□□ 0.6
Cdx2P43241 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx2P43241 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx2P43241 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx2P43241 Gm26766-202ENSMUST00000227544 2347 ntBASIC18.82■□□□□ 0.6
Cdx2P43241 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx2P43241 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.81■□□□□ 0.6
Cdx2P43241 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx2P43241 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx2P43241 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx2P43241 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx2P43241 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Cdx2P43241 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx2P43241 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdx2P43241 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Cdx2P43241 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdx2P43241 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdx2P43241 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Cdx2P43241 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdx2P43241 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdx2P43241 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cdx2P43241 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx2P43241 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx2P43241 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx2P43241 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx2P43241 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Cdx2P43241 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.79■□□□□ 0.6
Cdx2P43241 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx2P43241 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Cdx2P43241 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.78■□□□□ 0.6
Cdx2P43241 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx2P43241 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Cdx2P43241 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx2P43241 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx2P43241 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC18.77■□□□□ 0.6
Cdx2P43241 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
Cdx2P43241 Gm13146-201ENSMUST00000118508 780 ntBASIC18.77■□□□□ 0.6
Cdx2P43241 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.77■□□□□ 0.6
Cdx2P43241 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Cdx2P43241 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.77■□□□□ 0.6
Cdx2P43241 CT030146.1-201ENSMUST00000220919 217 ntBASIC18.77■□□□□ 0.6
Cdx2P43241 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC18.77■□□□□ 0.6
Cdx2P43241 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx2P43241 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cdx2P43241 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cdx2P43241 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Cdx2P43241 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Cdx2P43241 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Cdx2P43241 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cdx2P43241 Rhbdd3-201ENSMUST00000036320 1790 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx2P43241 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms