Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx1P18111 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
Cdx1P18111 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Cdx1P18111 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC15.77■□□□□ 0.12
Cdx1P18111 Etf1-202ENSMUST00000180351 108 ntBASIC15.77■□□□□ 0.12
Cdx1P18111 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC15.77■□□□□ 0.12
Cdx1P18111 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Cdx1P18111 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx1P18111 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC15.77■□□□□ 0.11
Cdx1P18111 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Cdx1P18111 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx1P18111 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx1P18111 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx1P18111 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC15.76■□□□□ 0.11
Cdx1P18111 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx1P18111 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx1P18111 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx1P18111 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Cdx1P18111 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Cdx1P18111 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Cdx1P18111 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Cdx1P18111 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Cdx1P18111 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Cdx1P18111 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
Cdx1P18111 Gm45606-201ENSMUST00000209836 2795 ntBASIC15.75■□□□□ 0.11
Cdx1P18111 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Cdx1P18111 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Cdx1P18111 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC15.74■□□□□ 0.11
Cdx1P18111 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC15.74■□□□□ 0.11
Cdx1P18111 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Gm35558-201ENSMUST00000222675 2219 ntBASIC15.74■□□□□ 0.11
Cdx1P18111 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Cdx1P18111 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Cdx1P18111 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Cdx1P18111 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC15.73■□□□□ 0.11
Cdx1P18111 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
Cdx1P18111 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC15.73■□□□□ 0.11
Cdx1P18111 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Cdx1P18111 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Cdx1P18111 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Cdx1P18111 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Cdx1P18111 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Cdx1P18111 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC15.72■□□□□ 0.11
Cdx1P18111 Gm16464-201ENSMUST00000117815 1095 ntBASIC15.72■□□□□ 0.11
Cdx1P18111 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC15.72■□□□□ 0.11
Cdx1P18111 Gm37035-201ENSMUST00000194809 2148 ntBASIC15.72■□□□□ 0.11
Cdx1P18111 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Ddx41-204ENSMUST00000224765 2199 ntBASIC15.72■□□□□ 0.11
Cdx1P18111 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Cdx1P18111 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC15.71■□□□□ 0.11
Cdx1P18111 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
Cdx1P18111 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Cdx1P18111 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Cdx1P18111 Gm44832-201ENSMUST00000208849 2303 ntBASIC15.71■□□□□ 0.11
Cdx1P18111 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC15.71■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms