Protein–RNA interactions for Protein: P15379

Cd44, CD44 antigen, mousemouse

Predictions only

Length 778 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd44P15379 Gm9870-201ENSMUST00000063874 645 ntBASIC20.79■□□□□ 0.92
Cd44P15379 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Cd44P15379 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
Cd44P15379 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cd44P15379 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cd44P15379 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cd44P15379 Gm10657-201ENSMUST00000193528 1031 ntBASIC20.78■□□□□ 0.92
Cd44P15379 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cd44P15379 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cd44P15379 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cd44P15379 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Cd44P15379 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
Cd44P15379 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cd44P15379 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cd44P15379 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cd44P15379 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cd44P15379 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cd44P15379 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cd44P15379 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cd44P15379 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cd44P15379 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cd44P15379 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Cd44P15379 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Cd44P15379 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cd44P15379 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cd44P15379 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Cd44P15379 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.76■□□□□ 0.91
Cd44P15379 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Cd44P15379 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Cd44P15379 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC20.76■□□□□ 0.91
Cd44P15379 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Cd44P15379 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
Cd44P15379 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cd44P15379 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC20.75■□□□□ 0.91
Cd44P15379 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cd44P15379 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cd44P15379 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Cd44P15379 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd44P15379 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd44P15379 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd44P15379 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd44P15379 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd44P15379 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd44P15379 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.74■□□□□ 0.91
Cd44P15379 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cd44P15379 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cd44P15379 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cd44P15379 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cd44P15379 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cd44P15379 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Cd44P15379 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cd44P15379 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd44P15379 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd44P15379 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd44P15379 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.72■□□□□ 0.91
Cd44P15379 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC20.72■□□□□ 0.91
Cd44P15379 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cd44P15379 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cd44P15379 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Cd44P15379 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cd44P15379 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cd44P15379 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cd44P15379 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.7■□□□□ 0.9
Cd44P15379 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.7■□□□□ 0.9
Cd44P15379 Gm15820-201ENSMUST00000201566 728 ntBASIC20.7■□□□□ 0.9
Cd44P15379 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cd44P15379 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cd44P15379 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cd44P15379 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Cd44P15379 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Cd44P15379 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cd44P15379 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Cd44P15379 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
Cd44P15379 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cd44P15379 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cd44P15379 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cd44P15379 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cd44P15379 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cd44P15379 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cd44P15379 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.68■□□□□ 0.9
Cd44P15379 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.67■□□□□ 0.9
Cd44P15379 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cd44P15379 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cd44P15379 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cd44P15379 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.67■□□□□ 0.9
Cd44P15379 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cd44P15379 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Cd44P15379 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cd44P15379 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cd44P15379 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Cd44P15379 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms