Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Reep4-203ENSMUST00000226563 1444 ntBASIC23.89■■□□□ 1.42
Col3a1P08121 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Col3a1P08121 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Col3a1P08121 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Col3a1P08121 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
Col3a1P08121 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col3a1P08121 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Col3a1P08121 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col3a1P08121 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col3a1P08121 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Col3a1P08121 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC23.88■■□□□ 1.41
Col3a1P08121 Gm43006-201ENSMUST00000197702 1602 ntBASIC23.88■■□□□ 1.41
Col3a1P08121 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC23.87■■□□□ 1.41
Col3a1P08121 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
Col3a1P08121 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC23.87■■□□□ 1.41
Col3a1P08121 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC23.87■■□□□ 1.41
Col3a1P08121 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Col3a1P08121 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col3a1P08121 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col3a1P08121 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col3a1P08121 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col3a1P08121 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
Col3a1P08121 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
Col3a1P08121 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC23.86■■□□□ 1.41
Col3a1P08121 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Col3a1P08121 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Col3a1P08121 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col3a1P08121 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
Col3a1P08121 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col3a1P08121 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col3a1P08121 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col3a1P08121 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Col3a1P08121 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
Col3a1P08121 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Col3a1P08121 Gm42778-201ENSMUST00000199644 553 ntBASIC23.85■■□□□ 1.41
Col3a1P08121 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
Col3a1P08121 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Col3a1P08121 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col3a1P08121 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col3a1P08121 Gm27011-201ENSMUST00000182352 972 ntBASIC23.84■■□□□ 1.41
Col3a1P08121 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col3a1P08121 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC23.84■■□□□ 1.41
Col3a1P08121 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC23.84■■□□□ 1.41
Col3a1P08121 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col3a1P08121 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Col3a1P08121 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Col3a1P08121 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Col3a1P08121 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Col3a1P08121 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC23.83■■□□□ 1.41
Col3a1P08121 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC23.83■■□□□ 1.41
Col3a1P08121 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
Col3a1P08121 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Col3a1P08121 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
Col3a1P08121 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Col3a1P08121 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
Col3a1P08121 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Col3a1P08121 Gm9988-201ENSMUST00000069786 435 ntBASIC23.82■■□□□ 1.4
Col3a1P08121 Gm38160-201ENSMUST00000193090 2499 ntBASIC23.82■■□□□ 1.4
Col3a1P08121 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Col3a1P08121 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC23.82■■□□□ 1.4
Col3a1P08121 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
Col3a1P08121 AC112142.1-201ENSMUST00000228796 918 ntBASIC23.81■■□□□ 1.4
Col3a1P08121 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col3a1P08121 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.81■■□□□ 1.4
Col3a1P08121 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col3a1P08121 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col3a1P08121 Gm42911-201ENSMUST00000199360 1630 ntBASIC23.81■■□□□ 1.4
Col3a1P08121 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Col3a1P08121 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Col3a1P08121 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC23.79■■□□□ 1.4
Col3a1P08121 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Col3a1P08121 Gm15043-201ENSMUST00000118843 1543 ntBASIC23.79■■□□□ 1.4
Col3a1P08121 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col3a1P08121 Gm37035-201ENSMUST00000194809 2148 ntBASIC23.79■■□□□ 1.4
Col3a1P08121 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col3a1P08121 Gm13146-201ENSMUST00000118508 780 ntBASIC23.79■■□□□ 1.4
Col3a1P08121 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col3a1P08121 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col3a1P08121 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col3a1P08121 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Col3a1P08121 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC23.78■■□□□ 1.4
Col3a1P08121 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Col3a1P08121 Ap3s1-204ENSMUST00000225520 957 ntBASIC23.78■■□□□ 1.4
Col3a1P08121 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col3a1P08121 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Col3a1P08121 AC152827.1-201ENSMUST00000221143 2189 ntBASIC23.78■■□□□ 1.4
Col3a1P08121 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col3a1P08121 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Col3a1P08121 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Col3a1P08121 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Col3a1P08121 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC23.77■■□□□ 1.4
Col3a1P08121 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Col3a1P08121 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms