Protein–RNA interactions for Protein: O35454

Clcn6, Chloride transport protein 6, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn6O35454 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Gm9959-201ENSMUST00000068277 390 ntBASIC20.67■□□□□ 0.9
Clcn6O35454 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC20.67■□□□□ 0.9
Clcn6O35454 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Clcn6O35454 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Gm14117-201ENSMUST00000122417 843 ntBASIC20.66■□□□□ 0.9
Clcn6O35454 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.66■□□□□ 0.9
Clcn6O35454 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC20.66■□□□□ 0.9
Clcn6O35454 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.66■□□□□ 0.9
Clcn6O35454 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Clcn6O35454 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC20.65■□□□□ 0.9
Clcn6O35454 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clcn6O35454 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clcn6O35454 Gm10399-202ENSMUST00000202768 748 ntBASIC20.65■□□□□ 0.9
Clcn6O35454 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC20.65■□□□□ 0.9
Clcn6O35454 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clcn6O35454 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Clcn6O35454 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Clcn6O35454 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Clcn6O35454 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Clcn6O35454 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Clcn6O35454 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Clcn6O35454 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clcn6O35454 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clcn6O35454 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Clcn6O35454 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC20.63■□□□□ 0.89
Clcn6O35454 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clcn6O35454 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clcn6O35454 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clcn6O35454 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clcn6O35454 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Clcn6O35454 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Clcn6O35454 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Clcn6O35454 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Clcn6O35454 Gm22993-201ENSMUST00000175423 254 ntBASIC20.62■□□□□ 0.89
Clcn6O35454 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Clcn6O35454 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Clcn6O35454 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clcn6O35454 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC20.61■□□□□ 0.89
Clcn6O35454 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.61■□□□□ 0.89
Clcn6O35454 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Clcn6O35454 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC20.61■□□□□ 0.89
Clcn6O35454 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Clcn6O35454 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clcn6O35454 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Clcn6O35454 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Clcn6O35454 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clcn6O35454 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Clcn6O35454 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Clcn6O35454 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clcn6O35454 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clcn6O35454 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC20.6■□□□□ 0.89
Clcn6O35454 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Clcn6O35454 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Clcn6O35454 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Clcn6O35454 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clcn6O35454 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clcn6O35454 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.6■□□□□ 0.89
Clcn6O35454 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.6■□□□□ 0.89
Clcn6O35454 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Clcn6O35454 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Klra4-201ENSMUST00000119096 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Etf1-202ENSMUST00000180351 108 ntBASIC20.59■□□□□ 0.89
Clcn6O35454 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC20.59■□□□□ 0.89
Clcn6O35454 Olfr128-201ENSMUST00000080231 1050 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Clcn6O35454 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Clcn6O35454 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Clcn6O35454 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clcn6O35454 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clcn6O35454 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.58■□□□□ 0.89
Clcn6O35454 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clcn6O35454 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC20.58■□□□□ 0.89
Clcn6O35454 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.58■□□□□ 0.89
Clcn6O35454 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Clcn6O35454 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Clcn6O35454 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Clcn6O35454 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clcn6O35454 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clcn6O35454 Gm12849-201ENSMUST00000120013 739 ntBASIC20.57■□□□□ 0.88
Clcn6O35454 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Clcn6O35454 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms