Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a3E9PWQ3 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a3E9PWQ3 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC20.25■□□□□ 0.83
Col6a3E9PWQ3 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC20.25■□□□□ 0.83
Col6a3E9PWQ3 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col6a3E9PWQ3 Mir1199-201ENSMUST00000117015 119 ntBASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col6a3E9PWQ3 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col6a3E9PWQ3 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Mir5122-201ENSMUST00000175004 89 ntBASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col6a3E9PWQ3 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Gm5867-201ENSMUST00000063197 592 ntBASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Gm17971-201ENSMUST00000190239 806 ntBASIC20.21■□□□□ 0.83
Col6a3E9PWQ3 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.2■□□□□ 0.82
Col6a3E9PWQ3 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 Gm12896-201ENSMUST00000118430 226 ntBASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col6a3E9PWQ3 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.18■□□□□ 0.82
Col6a3E9PWQ3 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Col6a3E9PWQ3 Gm10698-201ENSMUST00000182663 604 ntBASIC20.18■□□□□ 0.82
Col6a3E9PWQ3 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a3E9PWQ3 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a3E9PWQ3 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col6a3E9PWQ3 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a3E9PWQ3 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Col6a3E9PWQ3 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a3E9PWQ3 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a3E9PWQ3 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col6a3E9PWQ3 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.17■□□□□ 0.82
Col6a3E9PWQ3 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col6a3E9PWQ3 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col6a3E9PWQ3 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC20.16■□□□□ 0.82
Col6a3E9PWQ3 Gm13146-201ENSMUST00000118508 780 ntBASIC20.16■□□□□ 0.82
Col6a3E9PWQ3 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Gm7461-201ENSMUST00000058918 827 ntBASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Gm44771-201ENSMUST00000206975 626 ntBASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col6a3E9PWQ3 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.82
Col6a3E9PWQ3 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col6a3E9PWQ3 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC20.14■□□□□ 0.82
Col6a3E9PWQ3 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC20.14■□□□□ 0.81
Col6a3E9PWQ3 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Col6a3E9PWQ3 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col6a3E9PWQ3 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col6a3E9PWQ3 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC20.14■□□□□ 0.81
Col6a3E9PWQ3 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms