Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm10250-201ENSMUST00000090488 482 ntBASIC9.74□□□□□ -0.85
Cdx2P43241 Clip1-204ENSMUST00000111564 5609 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Cdx2P43241 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Cdx2P43241 4930519G04Rik-201ENSMUST00000031547 2092 ntAPPRIS P2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Cdx2P43241 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC9.74□□□□□ -0.85
Cdx2P43241 Stat1-203ENSMUST00000186057 3998 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Cdx2P43241 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Cdx2P43241 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Cdx2P43241 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC9.74□□□□□ -0.85
Cdx2P43241 Gm19001-201ENSMUST00000222736 1651 ntBASIC9.74□□□□□ -0.85
Cdx2P43241 Cct3-201ENSMUST00000001452 1977 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Cdx2P43241 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Cdx2P43241 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm15383-201ENSMUST00000121889 1443 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Wdr95-207ENSMUST00000202902 2574 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Blnk-202ENSMUST00000117695 1701 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Spata33-207ENSMUST00000212760 4074 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm15604-201ENSMUST00000118350 1456 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Ttll9-201ENSMUST00000099197 1797 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Kcne4-201ENSMUST00000057262 2657 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Zdhhc9-201ENSMUST00000037960 2982 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Phf21a-202ENSMUST00000068702 6023 ntAPPRIS P3 TSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 2210010C04Rik-201ENSMUST00000031931 2142 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Ces1e-203ENSMUST00000176282 1883 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Rab38-201ENSMUST00000107256 1577 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm23062-201ENSMUST00000102349 110 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Gm22777-201ENSMUST00000104091 129 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Wfdc16-201ENSMUST00000109336 1116 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 4933424L21Rik-201ENSMUST00000142486 1186 ntTSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm11915-201ENSMUST00000153669 358 ntTSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm3617-201ENSMUST00000173076 555 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Igkv4-54-201ENSMUST00000177697 288 ntAPPRIS P1 BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm6317-201ENSMUST00000183159 1000 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Gm29346-201ENSMUST00000188147 255 ntTSL 3 BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm38301-201ENSMUST00000195573 543 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 BC002189-201ENSMUST00000195674 598 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 AC157931.1-201ENSMUST00000198565 346 ntAPPRIS P1 TSL 3 BASIC9.73□□□□□ -0.85
Cdx2P43241 AC165249.1-203ENSMUST00000219976 392 ntTSL 2 BASIC9.73□□□□□ -0.85
Cdx2P43241 AC163351.1-201ENSMUST00000225539 737 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 AC102523.2-201ENSMUST00000227813 983 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Opn1mw-201ENSMUST00000033771 1227 ntAPPRIS P2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm6684-201ENSMUST00000053717 685 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Rps18-201ENSMUST00000008812 600 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Olfr1155-201ENSMUST00000099843 945 ntAPPRIS P1 BASIC9.73□□□□□ -0.85
Cdx2P43241 Tbpl1-202ENSMUST00000127698 2873 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Alms1-ps2-202ENSMUST00000161983 2290 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Ralgps1-202ENSMUST00000091039 2738 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm13456-201ENSMUST00000118928 1365 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 B230312C02Rik-201ENSMUST00000145549 1703 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Ebf2-203ENSMUST00000176161 5204 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Zdhhc21-201ENSMUST00000030110 8763 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Khdrbs2-204ENSMUST00000188257 5278 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm13361-201ENSMUST00000119977 1431 ntBASIC9.73□□□□□ -0.85
Cdx2P43241 Gm15423-201ENSMUST00000150600 1430 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Cdx2P43241 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Cdx2P43241 Tmem154-201ENSMUST00000107682 3342 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Cass4-204ENSMUST00000228775 2629 ntAPPRIS ALT2 BASIC9.72□□□□□ -0.85
Cdx2P43241 Ccdc83-201ENSMUST00000040413 1546 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 9430064I24Rik-201ENSMUST00000206516 2669 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Tmx2-202ENSMUST00000111664 1926 ntTSL 3 BASIC9.72□□□□□ -0.85
Cdx2P43241 Sec31b-201ENSMUST00000063632 3939 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 Gm37516-201ENSMUST00000192593 1954 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Oprm1-213ENSMUST00000105604 1616 ntAPPRIS ALT1 TSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 Zfp384-204ENSMUST00000088308 2875 ntAPPRIS P2 TSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Dcstamp-205ENSMUST00000228556 1684 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
Cdx2P43241 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 Cryz-201ENSMUST00000029850 2507 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Fhl3-202ENSMUST00000106199 1139 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 H2afb2-201ENSMUST00000118616 348 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Cdx2P43241 Gm12035-201ENSMUST00000121890 623 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Gm11686-201ENSMUST00000122397 333 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Gm14323-201ENSMUST00000122418 627 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Gm16234-201ENSMUST00000124976 815 ntTSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 Gm13713-201ENSMUST00000139377 703 ntTSL 3 BASIC9.72□□□□□ -0.85
Cdx2P43241 Gm13713-202ENSMUST00000155472 285 ntTSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 Gm17171-201ENSMUST00000168048 534 ntTSL 3 BASIC9.72□□□□□ -0.85
Cdx2P43241 Gm23563-201ENSMUST00000174900 251 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Ighv5-1-201ENSMUST00000193324 353 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 Gm18538-201ENSMUST00000204265 484 ntBASIC9.72□□□□□ -0.85
Cdx2P43241 AC102312.1-202ENSMUST00000218600 851 ntTSL 2 BASIC9.72□□□□□ -0.85
Cdx2P43241 1700013G24Rik-201ENSMUST00000048893 1048 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Slc51b-201ENSMUST00000065894 709 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Far2-201ENSMUST00000032443 3480 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Cdx2P43241 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Cdx2P43241 Gm45677-201ENSMUST00000209975 1341 ntBASIC9.72□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 62.2 ms